Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68971 | Canola | cytosol | 97.37 | 97.37 |
| CDY67544 | Canola | cytosol | 68.42 | 64.6 |
| CDY63159 | Canola | cytosol | 67.76 | 63.98 |
| CDY01389 | Canola | cytosol | 67.11 | 63.35 |
| CDY29370 | Canola | cytosol | 59.87 | 56.52 |
| CDY44209 | Canola | cytosol | 59.87 | 56.52 |
| AT2G25700.1 | Thale cress | cytosol | 59.87 | 55.83 |
| AT1G20140.1 | Thale cress | cytosol | 59.87 | 55.83 |
| CDX85931 | Canola | cytosol | 54.61 | 54.97 |
| CDX68112 | Canola | cytosol | 54.61 | 54.97 |
| CDY13521 | Canola | cytosol | 57.24 | 54.38 |
| CDY39073 | Canola | cytosol | 57.24 | 54.38 |
| CDX73212 | Canola | cytosol | 55.26 | 52.17 |
| CDX93698 | Canola | cytosol | 53.29 | 51.92 |
| CDY40610 | Canola | cytosol | 53.29 | 51.92 |
| CDX87650 | Canola | cytosol | 54.61 | 51.55 |
| CDX77280 | Canola | cytosol | 51.97 | 49.69 |
| CDY40611 | Canola | cytosol | 48.03 | 48.67 |
| CDY16470 | Canola | cytosol | 50.66 | 48.43 |
| CDX80590 | Canola | cytosol | 50.0 | 47.2 |
| CDX93699 | Canola | cytosol | 49.34 | 46.88 |
| CDY69121 | Canola | cytosol | 38.82 | 45.04 |
| CDY03015 | Canola | cytosol | 44.74 | 45.03 |
| CDY45767 | Canola | cytosol | 44.74 | 44.16 |
| CDY04140 | Canola | cytosol | 46.05 | 44.03 |
| CDX89042 | Canola | cytosol | 45.39 | 43.4 |
| CDY17409 | Canola | cytosol | 42.76 | 40.88 |
| CDY14922 | Canola | cytosol | 43.42 | 39.29 |
| CDX96963 | Canola | cytosol | 44.08 | 35.45 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078I2Q7 | UniProt:A0A078I2Q7 | EnsemblPlants:CDY43408 | ProteinID:CDY43408 |
| ProteinID:CDY43408.1 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00076609001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 |
| PANTHER:PTHR11165:SF89 | InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 |
| SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EE15AE |
Description
BnaC07g14750DBnaC07g14750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2Q7]
Coordinates
chrLK032556:-:7356..7913
Molecular Weight (calculated)
16960.2 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.274
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKITLKSS DGISFQVDEA VALMSPRIKR MIEDDRTGNG ITIPNVNSAA LAKVIEYCKK HVEANADDTE LKAWDLDFAR ALEGLDKDAF FAVASAAHFL
101: NIGGLFDLTC KTVAEMVRGK TVDQIRDIFH IKNDYTDAEE AKMRKENAWA FE
101: NIGGLFDLTC KTVAEMVRGK TVDQIRDIFH IKNDYTDAEE AKMRKENAWA FE
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.