Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12640 | Canola | nucleus, plastid | 92.73 | 92.46 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 92.44 | 84.35 |
| CDY01803 | Canola | mitochondrion, plastid | 81.69 | 75.13 |
| CDY70354 | Canola | cytosol | 81.1 | 75.0 |
| CDY28891 | Canola | mitochondrion, plastid | 75.87 | 70.73 |
| CDY07427 | Canola | mitochondrion | 74.42 | 69.75 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 72.38 | 65.7 |
| PGSC0003DMT400074839 | Potato | nucleus | 63.08 | 57.87 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 58.72 | 56.58 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 63.37 | 56.48 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 54.07 | 56.36 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 45.35 | 55.71 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 49.71 | 55.52 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 61.63 | 55.06 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 54.94 | 54.62 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.65 | 53.41 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 53.78 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 51.16 | 49.58 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 54.65 | 49.09 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 54.65 | 48.83 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 56.1 | 48.61 |
| Zm00001d012016_P001 | Maize | nucleus | 53.78 | 48.43 |
| Zm00001d025218_P001 | Maize | nucleus | 52.33 | 48.26 |
| Os04t0385600-01 | Rice | nucleus | 55.23 | 48.1 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 53.2 | 47.16 |
| Zm00001d042328_P001 | Maize | nucleus | 53.2 | 46.92 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 51.74 | 46.48 |
| KXG34006 | Sorghum | nucleus | 53.2 | 46.45 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 51.45 | 46.21 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 51.45 | 46.09 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.0 | 45.87 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 53.49 | 44.77 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 54.65 | 44.76 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 54.65 | 44.76 |
| Zm00001d049186_P001 | Maize | mitochondrion | 42.15 | 44.21 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 42.73 | 43.88 |
| HORVU3Hr1G094600.2 | Barley | plastid | 51.74 | 43.1 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 37.79 | 42.62 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 28.2 | 42.54 |
| Os11t0488900-00 | Rice | mitochondrion | 44.19 | 42.46 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 24.71 | 41.87 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 45.64 | 41.42 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 52.33 | 41.19 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 23.55 | 40.5 |
| Zm00001d016505_P001 | Maize | mitochondrion | 32.56 | 29.71 |
| KXG30224 | Sorghum | mitochondrion | 24.42 | 27.27 |
| Os05t0388151-00 | Rice | nucleus | 14.53 | 26.6 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | UniProt:A0A078IN42 | EnsemblPlants:CDY51342 | ProteinID:CDY51342 |
| ProteinID:CDY51342.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00003242001 | InterPro:IPR001810 | InterPro:IPR002893 | InterPro:IPR011990 | PFAM:PF01753 | PFscan:PS50181 |
| PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EE117A | InterPro:Znf_MYND | SEG:seg | : | : |
Description
BnaC02g45710DBnaC02g45710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN42]
Coordinates
chrLK032987:+:21047..23024
Molecular Weight (calculated)
37258.8 Da
IEP (calculated)
9.301
GRAVY (calculated)
-0.163
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPARKTKID FYSAGAGDCV FTPGRKRRRC VSSSPISSAP KTKAGSDLLD SIPEDLVVSI LRRLASTSRL IVNIFNSCKR LNSLATSPLV LSRLSRKAFA
101: VKAQNWSEAA HRFLKRCVDA GNLEACYTLG MIRFYCLQNR RNGASLMAKA AIRSHAPSLY SLAVIQFNGS GGSKNDKDLR AGVALCARAA FLGHVDALRE
201: LGHCLQDGYA NARELAAVLS SGIKAHRSHS CPLLSDFGCN VPAPETHPAN KFLADWFAVR GGDSLGDGLR LCSHGGCGRP ETRKHEFRRC SVCGVVNYCS
301: RACQALDWKL RHKVDCAPME QDAAYDGEGN VQIDGDNVLV VPMS
101: VKAQNWSEAA HRFLKRCVDA GNLEACYTLG MIRFYCLQNR RNGASLMAKA AIRSHAPSLY SLAVIQFNGS GGSKNDKDLR AGVALCARAA FLGHVDALRE
201: LGHCLQDGYA NARELAAVLS SGIKAHRSHS CPLLSDFGCN VPAPETHPAN KFLADWFAVR GGDSLGDGLR LCSHGGCGRP ETRKHEFRRC SVCGVVNYCS
301: RACQALDWKL RHKVDCAPME QDAAYDGEGN VQIDGDNVLV VPMS
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.