Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0385600-01 | Rice | nucleus | 59.63 | 57.22 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 38.79 | 47.73 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 34.83 | 47.14 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 45.91 | 47.03 |
| CDY12640 | Canola | nucleus, plastid | 42.74 | 46.96 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 47.76 | 46.65 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 41.16 | 46.43 |
| Bra022516.1-P | Field mustard | cytosol | 40.37 | 46.08 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 46.44 | 45.71 |
| KRG97416 | Soybean | nucleus | 41.95 | 45.69 |
| CDY51342 | Canola | nucleus | 41.42 | 45.64 |
| CDY70354 | Canola | cytosol | 44.59 | 45.43 |
| CDY07427 | Canola | mitochondrion | 43.8 | 45.23 |
| CDY01803 | Canola | mitochondrion, plastid | 44.59 | 45.19 |
| Bra004220.1-P | Field mustard | nucleus | 44.33 | 45.16 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 44.85 | 45.09 |
| Bra004092.1-P | Field mustard | mitochondrion | 43.54 | 44.96 |
| KRH31482 | Soybean | mitochondrion | 42.74 | 44.75 |
| CDY28891 | Canola | mitochondrion, plastid | 43.27 | 44.44 |
| Os11t0488900-00 | Rice | mitochondrion | 41.95 | 44.41 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 44.33 | 44.33 |
| GSMUA_Achr11P... | Banana | nucleus | 41.42 | 44.23 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 44.85 | 44.04 |
| PGSC0003DMT400074839 | Potato | nucleus | 42.74 | 43.2 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 39.58 | 43.1 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 39.05 | 43.02 |
| KRH42672 | Soybean | mitochondrion | 41.95 | 40.66 |
| KRH58771 | Soybean | mitochondrion | 41.95 | 40.36 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 43.8 | 37.99 |
| Zm00001d016505_P001 | Maize | mitochondrion | 36.15 | 36.34 |
| KXG30224 | Sorghum | mitochondrion | 26.91 | 33.12 |
| Os05t0388151-00 | Rice | nucleus | 14.51 | 29.26 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:4329437 | ProteinID:BAD23173.1 | ProteinID:BAF08832.1 |
| ProteinID:BAS78829.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046872 | InterPro:IPR002893 |
| InterPro:IPR011990 | EnsemblPlantsGene:Os02g0506400 | EnsemblPlants:Os02t0506400-00 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 |
| PANTHER:PTHR12298:SF29 | UniProt:Q6K6K8 | SUPFAM:SSF144232 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00003B056B |
| RefSeq:XP_015624778.1 | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
Similar to Ubiquitin-specific protease 15. (Os02t0506400-00)
Coordinates
chr2:-:18025721..18027242
Molecular Weight (calculated)
39239.1 Da
IEP (calculated)
8.898
GRAVY (calculated)
0.020
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKRGAGAC ALSWDEEGEV SRGEKRRRAD GDGSSDVGGG GGIGAFDALH DELVVSILAD VAASAGSPAD LAAAMLTCRR FRELGKHGLV LARASPSAVA
101: VRAAAWCDDA HRFLVRCAEA GNVEASYLLG MIMFYCFENR KLGAELLGAA ARRGHGEALY SMAIIQFNGS GLPKDGRNLQ AGAQLCARAA SRGHTDALRE
201: LGHCVSDGYG VRRSLSGGRR LLIQANFREL CAAVANGGAR FAAALGRSGE CKPPGPHMCL LSDYGCHVAG AAGRRAHAAN AFLAGWYASR PLASGAGAAA
301: LRMCSQPTCG RPETRKHEFR RCSVCSGVIY CSRACQAMHW KVAHKSACVP MAHWLVAANA GAGNAVGAAA AAAAQMAMP
101: VRAAAWCDDA HRFLVRCAEA GNVEASYLLG MIMFYCFENR KLGAELLGAA ARRGHGEALY SMAIIQFNGS GLPKDGRNLQ AGAQLCARAA SRGHTDALRE
201: LGHCVSDGYG VRRSLSGGRR LLIQANFREL CAAVANGGAR FAAALGRSGE CKPPGPHMCL LSDYGCHVAG AAGRRAHAAN AFLAGWYASR PLASGAGAAA
301: LRMCSQPTCG RPETRKHEFR RCSVCSGVIY CSRACQAMHW KVAHKSACVP MAHWLVAANA GAGNAVGAAA AAAAQMAMP
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.