Factsheet for GSMUA_Achr11P26750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P25110_001	Banana	nucleus	65.92	63.24
GSMUA_Achr9P29380_001	Banana	mitochondrion	56.9	61.21
GSMUA_Achr9P01480_001	Banana	nucleus	57.75	59.25
GSMUA_Achr8P17530_001	Banana	mitochondrion	57.18	56.86
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.77	56.25
CDY16365	Canola	cytosol, nucleus, plastid	48.73	56.17
KRG97416	Soybean	nucleus	54.93	56.03
CDX91552	Canola	cytosol, nucleus, plastid	43.38	55.0
KRH31482	Soybean	mitochondrion	55.49	54.42
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	50.99	53.87
Bra022516.1-P	Field mustard	cytosol	50.14	53.61
VIT_01s0010g03630.t01	Wine grape	nucleus	58.03	53.51
KRH63766	Soybean	cytosol, nucleus, plastid	50.99	52.62
KRH54183	Soybean	cytosol, nucleus, plastid	50.7	51.72
PGSC0003DMT400074839	Potato	nucleus	54.37	51.47
CDY70354	Canola	cytosol	53.8	51.34
CDY51342	Canola	nucleus	49.58	51.16
Bra004220.1-P	Field mustard	nucleus	53.52	51.08
CDY01803	Canola	mitochondrion, plastid	53.8	51.07
CDY12640	Canola	nucleus, plastid	49.58	51.01
CDY07427	Canola	mitochondrion	52.39	50.68
Bra004092.1-P	Field mustard	mitochondrion	52.39	50.68
CDY28891	Canola	mitochondrion, plastid	52.68	50.68
Solyc05g015420.2.1	Tomato	mitochondrion	54.93	50.52
AT1G67340.1	Thale cress	mitochondrion, plastid	53.8	50.4
HORVU2Hr1G069440.2	Barley	nucleus	54.37	50.39
Os04t0385600-01	Rice	nucleus	55.77	50.13
GSMUA_Achr8P00700_001	Banana	plastid	61.41	49.89
TraesCS2B01G299700.1	Wheat	nucleus	53.8	49.61
Bra034004.1-P	Field mustard	nucleus, plastid	52.68	49.6
Zm00001d025218_P001	Maize	nucleus	51.55	49.06
KRH42672	Soybean	mitochondrion	53.52	48.59
TraesCS3B01G467900.1	Wheat	nucleus	52.39	48.56
Zm00001d003993_P001	Maize	mitochondrion, nucleus	53.8	48.11
TraesCS3A01G429900.1	Wheat	nucleus	51.83	48.04
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.14	47.47
TraesCS3D01G425300.1	Wheat	nucleus	51.27	47.4
KRH58771	Soybean	mitochondrion	52.39	47.21
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	51.55	47.16
HORVU2Hr1G081910.1	Barley	mitochondrion	26.48	47.0
OQU81347	Sorghum	mitochondrion, nucleus	54.37	46.96
Zm00001d049186_P001	Maize	mitochondrion	42.82	46.34
Zm00001d042328_P001	Maize	nucleus	50.7	46.15
EES09728	Sorghum	cytosol, nucleus, plastid	43.38	45.97
Zm00001d012016_P001	Maize	nucleus	49.01	45.55
TraesCS2D01G281100.1	Wheat	nucleus	53.8	45.48
TraesCS2A01G282300.1	Wheat	nucleus	53.24	45.0
Os11t0488900-00	Rice	mitochondrion	45.35	44.97
KXG34006	Sorghum	nucleus	49.86	44.92
HORVU3Hr1G094600.2	Barley	plastid	52.11	44.79
GSMUA_Achr9P07210_001	Banana	nucleus	38.31	44.59
HORVU4Hr1G080860.1	Barley	mitochondrion	25.35	44.34
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	26.76	41.67
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	44.23	41.42
Zm00001d016505_P001	Maize	mitochondrion	34.37	32.36
Os05t0388151-00	Rice	nucleus	15.49	29.26
KXG30224	Sorghum	mitochondrion	25.07	28.9

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G26750_001	EnsemblPlants:GSMUA_Achr11P26750_001	EnsemblPlants:GSMUA_Achr11T26750_001	InterPro:IPR002893
InterPro:IPR011990	UniProt:M0RVQ5	PFAM:PF01753	PFAM:PF08238	PFscan:PS50865	PANTHER:PTHR12298
PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:Sel1-like	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002948CA6	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

F-box protein At5g50450 [Source:GMGC_GENE;Acc:GSMUA_Achr11G26750_001]

Coordinates

chr11:-:25496164..25497539

Molecular Weight (calculated)

38468.1 Da

IEP (calculated)

9.183

GRAVY (calculated)

-0.307

Length

355 amino acids

Sequence
(BLAST)

001: MASQCLRPQP QMGDRGVRRA ERKRTPTGQG EAGSCCRKRP RVAATELPAK EERVDYFKRL PDDIIVSVLS KLSSSADSPS DLFSSMLTCK RFHVLGQHPL
101: VLSMASSRCL AVSAKTWSDS SHGYLKRCVD CGNLDACYML GMIRFYALEK RGSGASLMAR AAIGSNPAAL YSLAVIQFNG SGGSKNDKDP RAGVALCARA
201: AFHGHVDALR ELGHCLQDGY GVRKNVSEGR RLLVQANARE LAAAISFLPA WQKQRRPPTA AGFLKEWFEA RAGSAAEGLR LCSHRGCGRP ETRRHEFRRC
301: SVCGLVNYCS RACQALDWKL SHKAECFPMN PQAFDGGVGA GAAAGDDDAV VIEEA

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.