Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09728 | Sorghum | cytosol, nucleus, plastid | 63.69 | 68.06 |
| Zm00001d049186_P001 | Maize | mitochondrion | 61.73 | 67.38 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 42.18 | 49.03 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 53.07 | 48.97 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 38.27 | 48.93 |
| Bra022516.1-P | Field mustard | cytosol | 44.13 | 47.59 |
| KRG97416 | Soybean | nucleus | 46.09 | 47.41 |
| Os04t0385600-01 | Rice | nucleus | 52.23 | 47.34 |
| CDY12640 | Canola | nucleus, plastid | 44.69 | 46.38 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 49.44 | 45.97 |
| CDY07427 | Canola | mitochondrion | 46.93 | 45.78 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 42.74 | 45.54 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 46.93 | 45.41 |
| GSMUA_Achr11P... | Banana | nucleus | 44.97 | 45.35 |
| KRH31482 | Soybean | mitochondrion | 45.81 | 45.3 |
| CDY28891 | Canola | mitochondrion, plastid | 46.65 | 45.26 |
| Bra004092.1-P | Field mustard | mitochondrion | 46.09 | 44.96 |
| CDY70354 | Canola | cytosol | 46.65 | 44.89 |
| Bra004220.1-P | Field mustard | nucleus | 46.65 | 44.89 |
| CDY01803 | Canola | mitochondrion, plastid | 46.65 | 44.65 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 47.21 | 44.59 |
| CDY51342 | Canola | nucleus | 42.46 | 44.19 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 45.81 | 43.5 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 41.62 | 43.31 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 46.65 | 43.26 |
| PGSC0003DMT400074839 | Potato | nucleus | 45.25 | 43.2 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 41.62 | 42.82 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 44.41 | 41.95 |
| KRH42672 | Soybean | mitochondrion | 45.53 | 41.69 |
| KRH58771 | Soybean | mitochondrion | 45.25 | 41.12 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 45.53 | 37.3 |
| Os05t0388151-00 | Rice | nucleus | 16.76 | 31.91 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:9272396 | ProteinID:ABA93801.2 |
| ProteinID:BAT14078.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001810 | InterPro:IPR002893 | InterPro:IPR011990 |
| EnsemblPlantsGene:Os11g0488900 | EnsemblPlants:Os11t0488900-00 | PFAM:PF01753 | PFAM:PF12937 | PFscan:PS50865 | PANTHER:PTHR12298 |
| PANTHER:PTHR12298:SF29 | UniProt:Q2R448 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0000D89AD4 | RefSeq:XP_015615915.1 | InterPro:Znf_MYND | SEG:seg | : | : |
Description
F-box protein 600Similar to MYND finger family protein, expressed. (Os11t0488900-00)
Coordinates
chr11:+:17229938..17231333
Molecular Weight (calculated)
37692.7 Da
IEP (calculated)
10.300
GRAVY (calculated)
-0.209
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPRRRRGV HPAAATAPPC SAMASGAASP RSPPAAKKRA VVVAGDGDDS DVFDRLPDDI VLVVLSRLAA NAASPADVAS AALTCRRFRE LATHPAVLSR
101: ASAAAVAVRW GAWSEAAHRF LRRCAAAGSL HACYFLGMVR FYCLGSRATG AALLGRAAGG GHAPALYALA VVQFNGSGGG KADKDARAGV ALCARAAWLG
201: HTPALRELGH CLQDGYGARR DAPAGRRLLL HAAAREHLSW KKHNHGHHDG SAAEDAVSRF MVAWWDSHRA KAAARGCLPG EHGDGEHDGG EDLRLCSHAR
301: CGRRETRRHE FRRCSVCGAA SYCSRACQAL DWKRAHRAQC AAARWLAAAA AAADGVAH
101: ASAAAVAVRW GAWSEAAHRF LRRCAAAGSL HACYFLGMVR FYCLGSRATG AALLGRAAGG GHAPALYALA VVQFNGSGGG KADKDARAGV ALCARAAWLG
201: HTPALRELGH CLQDGYGARR DAPAGRRLLL HAAAREHLSW KKHNHGHHDG SAAEDAVSRF MVAWWDSHRA KAAARGCLPG EHGDGEHDGG EDLRLCSHAR
301: CGRRETRRHE FRRCSVCGAA SYCSRACQAL DWKRAHRAQC AAARWLAAAA AAADGVAH
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.