Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54183 | Soybean | cytosol, nucleus, plastid | 91.28 | 90.23 |
| KRG97416 | Soybean | nucleus | 63.37 | 62.64 |
| KRH31482 | Soybean | mitochondrion | 64.24 | 61.05 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 47.67 | 58.57 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 65.12 | 58.18 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 56.69 | 58.04 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 51.74 | 57.79 |
| Bra022516.1-P | Field mustard | cytosol | 54.94 | 56.93 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 55.81 | 55.49 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 53.2 | 55.45 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 57.27 | 55.18 |
| KRH42672 | Soybean | mitochondrion | 62.5 | 54.99 |
| KRH58771 | Soybean | mitochondrion | 62.79 | 54.82 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.07 | 52.84 |
| GSMUA_Achr11P... | Banana | nucleus | 52.62 | 50.99 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 54.07 | 50.27 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 54.07 | 48.31 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 52.91 | 47.52 |
| Os04t0385600-01 | Rice | nucleus | 52.62 | 45.82 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 52.62 | 45.59 |
| Zm00001d025218_P001 | Maize | nucleus | 49.42 | 45.58 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 51.16 | 45.36 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 54.36 | 44.52 |
| Zm00001d012016_P001 | Maize | nucleus | 49.42 | 44.5 |
| Zm00001d042328_P001 | Maize | nucleus | 50.29 | 44.36 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 54.07 | 44.29 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 49.13 | 44.13 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 47.97 | 44.0 |
| KXG34006 | Sorghum | nucleus | 50.29 | 43.91 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 38.66 | 43.61 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 48.55 | 43.6 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 48.55 | 43.49 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 51.45 | 43.07 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 41.57 | 42.69 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 27.91 | 42.11 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 53.2 | 41.88 |
| Os11t0488900-00 | Rice | mitochondrion | 43.31 | 41.62 |
| Zm00001d049186_P001 | Maize | mitochondrion | 39.53 | 41.46 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 23.84 | 41.0 |
| HORVU3Hr1G094600.2 | Barley | plastid | 49.13 | 40.92 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 23.55 | 39.9 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 43.02 | 39.05 |
| Zm00001d016505_P001 | Maize | mitochondrion | 33.14 | 30.24 |
| KXG30224 | Sorghum | mitochondrion | 25.87 | 28.9 |
| Os05t0388151-00 | Rice | nucleus | 14.53 | 26.6 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100781713 | Gene3D:3.30.60.180 | MapMan:35.1 | UniProt:A0A0R4J368 | EMBL:ACUP02002710 |
| InterPro:F-box-like_dom_sf | EnsemblPlantsGene:GLYMA_04G195700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 |
| InterPro:IPR011990 | EnsemblPlants:KRH63766 | ProteinID:KRH63766 | ProteinID:KRH63766.1 | PFAM:PF01753 | PFscan:PS50865 |
| PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0001B637CB | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:46749239..46751035
Molecular Weight (calculated)
38343.5 Da
IEP (calculated)
9.336
GRAVY (calculated)
-0.235
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRPCKHSKK KHDLFECLPD DLLVLILSKL SSTASSPSDF INIILTCKRL NRLGLHRLVL SKAASKLFAI KPKNWSEYAH SFLKHCANAG NVDACYTLGM
101: IRFYCLKNRG SGLSLMAKAA MKLHAPALYS LAVIQFNGSG GSKRDKDLRA GVALSARASL LGHIDALREL GHCLQDGYGV RQNVTEGRRL LVQANVRELA
201: YVLRAVAPSR CYETSLLTWR ALRCQRNNNN NNAVVACPLL SDYGYNVAAP EVQPANWFLR EWFESGKGKL EEGLRLCAHI GCGRPETRPH EFRRCSVCGK
301: VNYCSRGCQA LDWKLRHKME CSPVEMYDGG VDGENEFVVP NDAV
101: IRFYCLKNRG SGLSLMAKAA MKLHAPALYS LAVIQFNGSG GSKRDKDLRA GVALSARASL LGHIDALREL GHCLQDGYGV RQNVTEGRRL LVQANVRELA
201: YVLRAVAPSR CYETSLLTWR ALRCQRNNNN NNAVVACPLL SDYGYNVAAP EVQPANWFLR EWFESGKGKL EEGLRLCAHI GCGRPETRPH EFRRCSVCGK
301: VNYCSRGCQA LDWKLRHKME CSPVEMYDGG VDGENEFVVP NDAV
001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
Arabidopsis Description
F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.