Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G429900.1 | Wheat | nucleus | 88.53 | 86.68 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 88.53 | 86.46 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 83.73 | 81.98 |
| HORVU3Hr1G094600.2 | Barley | plastid | 86.93 | 78.93 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 76.8 | 74.23 |
| Zm00001d042328_P001 | Maize | nucleus | 74.13 | 71.28 |
| Zm00001d012016_P001 | Maize | nucleus | 71.47 | 70.16 |
| KXG34006 | Sorghum | nucleus | 72.8 | 69.29 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 40.8 | 54.64 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 55.47 | 54.03 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 43.47 | 52.92 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 54.4 | 52.85 |
| KRG97416 | Soybean | nucleus | 48.8 | 52.59 |
| PGSC0003DMT400074839 | Potato | nucleus | 52.53 | 52.53 |
| KRH31482 | Soybean | mitochondrion | 50.13 | 51.93 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 53.07 | 51.69 |
| CDY12640 | Canola | nucleus, plastid | 47.47 | 51.59 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 50.4 | 51.08 |
| Bra022516.1-P | Field mustard | cytosol | 45.07 | 50.9 |
| CDY28891 | Canola | mitochondrion, plastid | 49.87 | 50.68 |
| CDY07427 | Canola | mitochondrion | 49.33 | 50.41 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 45.07 | 50.3 |
| Bra004220.1-P | Field mustard | nucleus | 49.87 | 50.27 |
| CDY70354 | Canola | cytosol | 49.87 | 50.27 |
| CDY01803 | Canola | mitochondrion, plastid | 50.13 | 50.27 |
| GSMUA_Achr11P... | Banana | nucleus | 47.47 | 50.14 |
| Bra004092.1-P | Field mustard | mitochondrion | 49.07 | 50.14 |
| CDY51342 | Canola | nucleus | 45.87 | 50.0 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.13 | 49.87 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 49.33 | 48.81 |
| KRH42672 | Soybean | mitochondrion | 50.13 | 48.08 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 44.53 | 47.99 |
| KRH58771 | Soybean | mitochondrion | 50.4 | 47.97 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 44.0 | 47.97 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 48.53 | 41.65 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G468000.1 | EnsemblPlantsGene:TraesCS3B01G468000 | Gene3D:1.20.1280.50 | Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR002893 | InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf |
| InterPro:Znf_MYND | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | PFAM:PF01753 | PFscan:PS50865 | SEG:seg |
| SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:-:711883512..711884839
Molecular Weight (calculated)
39280.0 Da
IEP (calculated)
8.740
GRAVY (calculated)
-0.037
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRSGSLYT CDQAAPVAGQ KRKRSPAAAG EGCGLLRKRQ AAGPDFLDAI PDDLVLSIFS RLAASANSPS DLLSVHLTCK RLNGLGQQDM VFAKASPASL
101: AVKAAAWSEP VQRFLKGCAD AGNLEACYIL GMIRFYCLGS QSGGAALLAK AAVGGHPAAL YSLAVIQFNG SGGARSDRDL RAGAALCARS AALGHVDALR
201: ELGHCLQDGY GVRRDPAEGR RLLVAANARE LSLALAATAA SAAYPFASLP IGAVAGGAGV GVCSSPLLSD FGWSLPEAEP HTANQFMSDW WALSCVQACA
301: KKPEAATTGE SEGELRLCSH MRCGRKETRR HEFRRCSVCG AANYCSRACQ ALDWKRAHKA QCVPSACQPL NRIAT
101: AVKAAAWSEP VQRFLKGCAD AGNLEACYIL GMIRFYCLGS QSGGAALLAK AAVGGHPAAL YSLAVIQFNG SGGARSDRDL RAGAALCARS AALGHVDALR
201: ELGHCLQDGY GVRRDPAEGR RLLVAANARE LSLALAATAA SAAYPFASLP IGAVAGGAGV GVCSSPLLSD FGWSLPEAEP HTANQFMSDW WALSCVQACA
301: KKPEAATTGE SEGELRLCSH MRCGRKETRR HEFRRCSVCG AANYCSRACQ ALDWKRAHKA QCVPSACQPL NRIAT
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.