Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16365 | Canola | cytosol, nucleus, plastid | 91.87 | 99.03 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 83.43 | 82.44 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 56.63 | 56.97 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 58.43 | 56.07 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 59.64 | 55.46 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 58.73 | 55.4 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 56.93 | 54.94 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 56.93 | 54.31 |
| Bra004092.1-P | Field mustard | mitochondrion | 59.64 | 53.95 |
| Bra004220.1-P | Field mustard | nucleus | 59.94 | 53.49 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 61.45 | 52.99 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 58.13 | 51.19 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 56.33 | 50.54 |
| GSMUA_Achr11P... | Banana | nucleus | 53.61 | 50.14 |
| Zm00001d025218_P001 | Maize | nucleus | 53.61 | 47.72 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 54.82 | 47.27 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 54.22 | 47.0 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 46.39 | 45.97 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 42.17 | 45.9 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 53.31 | 45.62 |
| Os04t0385600-01 | Rice | nucleus | 54.22 | 45.57 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 52.41 | 45.43 |
| Zm00001d042328_P001 | Maize | nucleus | 53.31 | 45.38 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 54.22 | 45.34 |
| Zm00001d012016_P001 | Maize | nucleus | 52.11 | 45.29 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.9 | 45.07 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 52.11 | 45.05 |
| KXG34006 | Sorghum | nucleus | 53.31 | 44.92 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 51.51 | 44.65 |
| Zm00001d049186_P001 | Maize | mitochondrion | 43.98 | 44.51 |
| Os11t0488900-00 | Rice | mitochondrion | 47.59 | 44.13 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 54.22 | 43.8 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 55.12 | 43.57 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 56.63 | 43.02 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 54.22 | 42.86 |
| HORVU3Hr1G094600.2 | Barley | plastid | 52.71 | 42.37 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 46.08 | 40.37 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 23.8 | 39.5 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 27.11 | 39.47 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 24.1 | 39.41 |
| Zm00001d016505_P001 | Maize | mitochondrion | 37.05 | 32.63 |
| KXG30224 | Sorghum | mitochondrion | 27.41 | 29.55 |
| Os05t0388151-00 | Rice | nucleus | 16.57 | 29.26 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EnsemblPlantsGene:Bra022516 | EnsemblPlants:Bra022516.1 | EnsemblPlants:Bra022516.1-P |
| InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 |
| UniProt:M4E168 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | SUPFAM:SSF144232 |
| SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000254558B | InterPro:Znf_MYND | SEG:seg |
Description
AT5G50450 (E=4e-155) | zinc finger (MYND type) family protein
Coordinates
chrA02:+:9309439..9310572
Molecular Weight (calculated)
36358.8 Da
IEP (calculated)
8.544
GRAVY (calculated)
-0.126
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHLNKKPRL EKNLTVNVNH IDDLPDDLVF SILRKLSSSA SCPADFFNVL ITCKRLNRLG LHPLVLSRAG TQTLAVTAEK WSDSAHRFLK LCVNAGNIDA
101: CYVLGMIRFY CLQNPVSGAS LMARAAIKSH APALYSLSVI QFNGSGGTKS DKNLRAGVAL CARSAYLGHV DALRELGHCL QDGYGVPRDV AEGRRLLIQA
201: NARELAGSLR SYLSLKSGDE TLTELNGLPV QEIRPVNRFL KDWFDSGRVV LAEGLRMCSH GGCGRPETRS HEFRRCSVCG KVNYCSRGCQ ALDWRVKHKM
301: ECAPLDLWVG AAAIGVGDED VDAVEVENHA AR
101: CYVLGMIRFY CLQNPVSGAS LMARAAIKSH APALYSLSVI QFNGSGGTKS DKNLRAGVAL CARSAYLGHV DALRELGHCL QDGYGVPRDV AEGRRLLIQA
201: NARELAGSLR SYLSLKSGDE TLTELNGLPV QEIRPVNRFL KDWFDSGRVV LAEGLRMCSH GGCGRPETRS HEFRRCSVCG KVNYCSRGCQ ALDWRVKHKM
301: ECAPLDLWVG AAAIGVGDED VDAVEVENHA AR
001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
Arabidopsis Description
F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.