Factsheet for GSMUA_Achr8P17530_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01480_001	Banana	nucleus	70.87	73.12
GSMUA_Achr9P29380_001	Banana	mitochondrion	65.27	70.61
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	68.35	69.32
KRG97416	Soybean	nucleus	63.87	65.52
KRH31482	Soybean	mitochondrion	63.31	62.43
CDY16365	Canola	cytosol, nucleus, plastid	53.78	62.34
CDX91552	Canola	cytosol, nucleus, plastid	48.46	61.79
CDY07427	Canola	mitochondrion	63.03	61.31
CDY12640	Canola	nucleus, plastid	58.82	60.87
VIT_01s0010g03630.t01	Wine grape	nucleus	65.55	60.78
Bra004092.1-P	Field mustard	mitochondrion	61.9	60.22
GSMUA_Achr5P25110_001	Banana	nucleus	62.18	60.0
PGSC0003DMT400074839	Potato	nucleus	63.03	60.0
CDY28891	Canola	mitochondrion, plastid	61.9	59.89
Bra022516.1-P	Field mustard	cytosol	55.46	59.64
Solyc05g015420.2.1	Tomato	mitochondrion	64.43	59.59
Bra004220.1-P	Field mustard	nucleus	61.62	59.14
CDY70354	Canola	cytosol	61.62	59.14
CDY01803	Canola	mitochondrion, plastid	61.62	58.82
CDY51342	Canola	nucleus	56.58	58.72
AT1G67340.1	Thale cress	mitochondrion, plastid	62.18	58.58
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	54.9	58.33
KRH42672	Soybean	mitochondrion	63.31	57.8
Bra034004.1-P	Field mustard	nucleus, plastid	60.5	57.29
KRH63766	Soybean	cytosol, nucleus, plastid	55.18	57.27
GSMUA_Achr11P...	Banana	nucleus	56.86	57.18
KRH58771	Soybean	mitochondrion	63.03	57.11
KRH54183	Soybean	cytosol, nucleus, plastid	54.9	56.32
GSMUA_Achr9P07210_001	Banana	nucleus	43.98	51.48
GSMUA_Achr8P00700_001	Banana	plastid	59.1	48.28

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G17530_001	EnsemblPlants:GSMUA_Achr8P17530_001	EnsemblPlants:GSMUA_Achr8T17530_001	InterPro:IPR002893	InterPro:IPR011990
UniProt:M0TRA6	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029562C8	InterPro:Znf_MYND	SEG:seg

Description

F-box protein At1g67340 [Source:GMGC_GENE;Acc:GSMUA_Achr8G17530_001]

Coordinates

chr8:+:17590747..17593724

Molecular Weight (calculated)

38591.7 Da

IEP (calculated)

9.347

GRAVY (calculated)

-0.088

Length

357 amino acids

Sequence
(BLAST)

001: MFYSLGLKRY TIYVLMSRKR RRRLPPGEAA VGRKDFGWKM ATEAVSEDSP DFFDGLPDDL VVSILCKLIA SATSPSDLIS VLVTCKRLNR LGLNPLVLHM
101: ASVKSLAVRA KKWSESAHRF LKRCADAGNL EACYILGMIR FYCLQNRGSG ASLMARAAMG SHAAALYSLA VIQFNGSGGA KGDKDLRAGV ALCARAAFLG
201: HVDALRELGH CLQDGYGVRR NIAEGRRFLV QANARELAAV LNDFGCNVPA PKAHPANRFM VEWFAARGPG GGPGDEGLRL CSHGDCGRPE TRRHEFRRCS
301: VCGAVNYCSR ACQALHWKLA HKAECAPMGR WLEADAVYAA VGGAPPEVDN GGGGAMY

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.