CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDY01389
CDY13521
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67340.1	CDY01389	AT1G20140.1	12169662
AT1G67340.1	CDY29370	AT1G20140.1	12169662
AT1G67340.1	CDY43408	AT1G20140.1	12169662
AT1G67340.1	CDY44209	AT1G20140.1	12169662
AT1G67340.1	CDY63159	AT1G20140.1	12169662
AT1G67340.1	CDY67544	AT1G20140.1	12169662
AT1G67340.1	CDY68971	AT1G20140.1	12169662
AT1G67340.1	CDX68112	AT1G75950.1	12169662
AT1G67340.1	CDX73212	AT1G75950.1	12169662
AT1G67340.1	CDX80590	AT1G75950.1	12169662
AT1G67340.1	CDX85931	AT1G75950.1	12169662
AT1G67340.1	CDX87650	AT1G75950.1	12169662
AT1G67340.1	CDY13521	AT1G75950.1	12169662
AT1G67340.1	CDY39073	AT1G75950.1	12169662
AT1G67340.1	CDX77280	AT3G60010.1	12169662
AT1G67340.1	CDX93698	AT3G60010.1	12169662
AT1G67340.1	CDX93699	AT3G60010.1	12169662
AT1G67340.1	CDY16470	AT3G60010.1	12169662
AT1G67340.1	CDY40610	AT3G60010.1	12169662
AT1G67340.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70354	Canola	cytosol	97.59	98.12
CDY12640	Canola	nucleus, plastid	77.01	83.48
CDY51342	Canola	nucleus	75.13	81.69
CDY28891	Canola	mitochondrion, plastid	80.21	81.3
CDY07427	Canola	mitochondrion	78.61	80.11
AT1G67340.1	Thale cress	mitochondrion, plastid	80.75	79.68
PGSC0003DMT400074839	Potato	nucleus	64.97	64.8
Solyc05g015420.2.1	Tomato	mitochondrion	66.04	63.99
VIT_01s0010g03630.t01	Wine grape	nucleus	64.71	62.86
GSMUA_Achr9P29380_001	Banana	mitochondrion	54.55	61.82
GSMUA_Achr8P17530_001	Banana	mitochondrion	58.82	61.62
CDX91552	Canola	cytosol, nucleus, plastid	45.99	61.43
GSMUA_Achr9P01480_001	Banana	nucleus	56.42	60.98
CDY16365	Canola	cytosol, nucleus, plastid	50.0	60.71
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.62	59.09
GSMUA_Achr5P25110_001	Banana	nucleus	55.08	55.68
GSMUA_Achr11P...	Banana	nucleus	51.07	53.8
HORVU2Hr1G069440.2	Barley	nucleus	53.74	52.48
TraesCS2B01G299700.1	Wheat	nucleus	53.74	52.21
Zm00001d025218_P001	Maize	nucleus	51.6	51.74
Zm00001d012016_P001	Maize	nucleus	52.67	51.57
Zm00001d003993_P001	Maize	mitochondrion, nucleus	54.28	51.13
Os04t0385600-01	Rice	nucleus	53.74	50.89
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	52.67	50.77
Zm00001d042328_P001	Maize	nucleus	52.94	50.77
KXG34006	Sorghum	nucleus	53.48	50.76
TraesCS3A01G429900.1	Wheat	nucleus	51.6	50.39
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.27	50.13
TraesCS3D01G425300.1	Wheat	nucleus	51.34	50.0
TraesCS3B01G467900.1	Wheat	nucleus	51.07	49.87
OQU81347	Sorghum	mitochondrion, nucleus	54.55	49.63
TraesCS2D01G281100.1	Wheat	nucleus	53.74	47.86
TraesCS2A01G282300.1	Wheat	nucleus	53.48	47.62
Zm00001d049186_P001	Maize	mitochondrion	41.18	46.95
EES09728	Sorghum	cytosol, nucleus, plastid	41.98	46.87
Os11t0488900-00	Rice	mitochondrion	44.65	46.65
HORVU3Hr1G094600.2	Barley	plastid	51.34	46.49
GSMUA_Achr8P00700_001	Banana	plastid	54.01	46.22
GSMUA_Achr9P07210_001	Banana	nucleus	37.43	45.9
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	27.54	45.18
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	45.19	44.59
HORVU4Hr1G080860.1	Barley	mitochondrion	24.06	44.34
HORVU2Hr1G081910.1	Barley	mitochondrion	23.53	44.0
Zm00001d016505_P001	Maize	mitochondrion	33.69	33.42
Os05t0388151-00	Rice	nucleus	15.51	30.85
KXG30224	Sorghum	mitochondrion	24.87	30.19

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	EnsemblPlants:CDY01803	ProteinID:CDY01803	ProteinID:CDY01803.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00112949001	InterPro:IPR002893
InterPro:IPR011990	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EC2649	InterPro:Znf_MYND	SEG:seg

Description

BnaC06g28430D

Coordinates

chrLK031929:+:417370..418968

Molecular Weight (calculated)

40140.1 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.172

Length

374 amino acids

Sequence
(BLAST)

001: MLPVRKTKRA FYSADAGDGV FTPGKKRRRC LSSPASVSKA GPDLLDTIPD DLVVSILRRL ASTSRCPADF INVLMTCKRL KSLATSPLVL SRLSRKAIAV
101: KAQNWSEDAH RFLKRCVDAG SLEACYTLGM IRFYCLQNRG NGASLMAKAA ISSYAPALYS LAVIQFNGSG GSKNDKDLRA GVALCARAAF LGHVDALREL
201: GHCLQDGYGV PQNVSEGRRF LVQANARELA AVLSSGNEAC SWLTLSQPQA PNQIRGCPLL SDFGCNVPAP EIHPANRFLA DWFAVRGGDA PGDGLRLCSH
301: GGCGRPETRK HEFRRCSVCG VVNYCSRACQ ALDWKLRHKI DCAPVEQDAA GGDGEGNVQV EGNGNGDNVL VPMS

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.