Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018756.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY40610 | Canola | cytosol | 94.23 | 94.23 |
| CDX93699 | Canola | cytosol | 78.21 | 76.25 |
| CDX68112 | Canola | cytosol | 71.79 | 74.17 |
| CDX85931 | Canola | cytosol | 71.79 | 74.17 |
| CDY40611 | Canola | cytosol | 71.15 | 74.0 |
| AT3G60010.1 | Thale cress | cytosol | 71.15 | 72.08 |
| CDY13521 | Canola | cytosol | 73.08 | 71.25 |
| CDY39073 | Canola | cytosol | 73.08 | 71.25 |
| CDX73212 | Canola | cytosol | 70.51 | 68.32 |
| CDX87650 | Canola | cytosol | 69.87 | 67.7 |
| CDX77280 | Canola | cytosol | 64.74 | 63.52 |
| CDY16470 | Canola | cytosol | 64.74 | 63.52 |
| CDY69121 | Canola | cytosol | 51.92 | 61.83 |
| CDX89042 | Canola | cytosol | 62.82 | 61.64 |
| CDY44209 | Canola | cytosol | 62.18 | 60.25 |
| CDY29370 | Canola | cytosol | 61.54 | 59.63 |
| CDX80590 | Canola | cytosol | 60.9 | 59.01 |
| CDY63159 | Canola | cytosol | 58.33 | 56.52 |
| CDY67544 | Canola | cytosol | 58.33 | 56.52 |
| CDY01389 | Canola | cytosol | 57.69 | 55.9 |
| CDY43408 | Canola | cytosol | 51.92 | 53.29 |
| CDY45767 | Canola | cytosol | 51.92 | 52.6 |
| CDY04140 | Canola | cytosol | 53.21 | 52.2 |
| CDY68971 | Canola | cytosol | 50.64 | 51.97 |
| CDY03015 | Canola | cytosol | 50.0 | 51.66 |
| CDY14922 | Canola | cytosol | 55.13 | 51.19 |
| CDY17409 | Canola | cytosol | 50.64 | 49.69 |
| CDX96963 | Canola | cytosol | 53.85 | 44.44 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078E2H5 | EnsemblPlants:CDX93698 | ProteinID:CDX93698 | ProteinID:CDX93698.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00156387001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI000253EC5E | SEG:seg |
Description
BnaA06g03500D
Coordinates
chrLK031876:-:1391082..1391552
Molecular Weight (calculated)
17519.8 Da
IEP (calculated)
4.190
GRAVY (calculated)
-0.276
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSKKIVLK SSDGHIFEVE EAVALQSQTI ANMIEDDCVD NEIPIPNING EILSKVIVYC KKHVVLPDGD SSSSAKEELK AWDAEFMKTD QSTLFNLILA
101: ANFLNIKNLL DLGCQTVADM ITGKTPEEIR TVLNIENDFT PEEEKEIRKE NQWAFE
101: ANFLNIKNLL DLGCQTVADM ITGKTPEEIR TVLNIENDFT PEEEKEIRKE NQWAFE
001: MSKMVMLLSS DGESFQVEEA VAVQSQTIAH MIEDDCVANG VPIANVTGVI LSKVIEYCKK HVVSDSPTEE SKDELKKWDA EFMKALEQSS TLFDVMLAAN
101: YLNIKDLLDL GCQTVADMIT GKKPDEIRAL LGIENDFTPE EEEEIRKENQ WAFE
101: YLNIKDLLDL GCQTVADMIT GKKPDEIRAL LGIENDFTPE EEEEIRKENQ WAFE
Arabidopsis Description
ASK13SK13 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.