CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDY01389
CDY13521
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55000.1	CDX68112	AT1G75950.1	12169662
AT1G55000.1	CDX73212	AT1G75950.1	12169662
AT1G55000.1	CDX80590	AT1G75950.1	12169662
AT1G55000.1	CDX85931	AT1G75950.1	12169662
AT1G55000.1	CDX87650	AT1G75950.1	12169662
AT1G55000.1	CDY13521	AT1G75950.1	12169662
AT1G55000.1	CDY39073	AT1G75950.1	12169662
AT1G55000.1	CDY01389	AT2G25700.1	12169662
AT1G55000.1	CDY29370	AT2G25700.1	12169662
AT1G55000.1	CDY43408	AT2G25700.1	12169662
AT1G55000.1	CDY44209	AT2G25700.1	12169662
AT1G55000.1	CDY63159	AT2G25700.1	12169662
AT1G55000.1	CDY67544	AT2G25700.1	12169662
AT1G55000.1	CDY68971	AT2G25700.1	12169662
AT1G55000.1	CDX77280	AT3G60010.1	12169662
AT1G55000.1	CDX93698	AT3G60010.1	12169662
AT1G55000.1	CDX93699	AT3G60010.1	12169662
AT1G55000.1	CDY16470	AT3G60010.1	12169662
AT1G55000.1	CDY40610	AT3G60010.1	12169662
AT1G55000.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45130	Canola	cytosol	94.23	94.23
AT1G55000.1	Thale cress	extracellular	72.69	85.52
VIT_14s0128g00770.t01	Wine grape	cytosol	60.38	59.02
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	27.31	57.26
KRH33942	Soybean	plastid	56.92	56.27
PGSC0003DMT400063440	Potato	cytosol	57.69	55.97
Solyc01g099130.2.1	Tomato	cytosol	57.31	55.6
KRG92859	Soybean	cytosol	56.54	52.69
GSMUA_Achr4P06870_001	Banana	nucleus	49.23	47.94
Os03t0699600-01	Rice	cytosol	40.77	47.75
HORVU4Hr1G005990.3	Barley	cytosol	43.85	47.11
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	45.0	46.61
GSMUA_Achr7P27060_001	Banana	nucleus	48.08	46.47
EER93613	Sorghum	cytosol, nucleus, plastid	45.0	46.43
TraesCS4D01G035300.1	Wheat	cytosol	43.46	46.12
TraesCS4A01G275700.1	Wheat	plastid	43.85	45.97
TraesCS4B01G038000.1	Wheat	cytosol	41.92	44.49
HORVU4Hr1G016970.1	Barley	cytosol, plastid	11.15	30.21
HORVU5Hr1G020010.1	Barley	mitochondrion	8.85	27.06
HORVU5Hr1G125580.1	Barley	cytosol, plastid	7.31	26.76
HORVU1Hr1G055850.1	Barley	cytosol	11.92	23.85
HORVU3Hr1G108470.1	Barley	cytosol	14.23	23.12
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	11.15	13.24

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	EnsemblPlants:CDX71564	ProteinID:CDX71564	ProteinID:CDX71564.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00148567001	InterPro:IPR018392
InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	PFAM:PF01476	PFscan:PS51782	PANTHER:PTHR20932
PANTHER:PTHR20932:SF8	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383	UniParc:UPI0004EF02CF	SEG:seg

Description

BnaC04g17990D

Coordinates

chrLK031793:+:3077890..3079597

Molecular Weight (calculated)

28914.4 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.190

Length

260 amino acids

Sequence
(BLAST)

001: MDCCCCNQND GNDFLTESLT ATGSSDQSTT TISPLNSHFM ALTCRDTLGL IFQRLTVADL ARARCVCRVW NSVATENDLV ASAFTAPWLI KELVGKPASG
101: AFWRDNGIWK FAISHRISRG DSVTSLAVKY SVQVMDIKRL NNMMSDHGIY SRDRLLIPIS SPEILVDTTC YIEVDKYAKR EVAVLYLEGG PKREQSASGM
201: NHLSTLSAHG KRRLIESLRR SMQVDDETAL YYLAIAEGNP RSALSEFSAD LTWERQASLN

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.