Factsheet for VIT_14s0128g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55000.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G55000.1	Thale cress	extracellular	55.26	66.52
Solyc01g099130.2.1	Tomato	cytosol	65.79	65.3
PGSC0003DMT400063440	Potato	cytosol	64.66	64.18
KRH33942	Soybean	plastid	62.03	62.74
Bra038977.1-P	Field mustard	cytosol	59.77	61.15
CDY45130	Canola	cytosol	59.77	61.15
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	28.2	60.48
CDX71564	Canola	cytosol	59.02	60.38
KRG92859	Soybean	cytosol	63.16	60.22
GSMUA_Achr4P06870_001	Banana	nucleus	57.14	56.93
GSMUA_Achr7P27060_001	Banana	nucleus	55.64	55.02
Os03t0699600-01	Rice	cytosol	43.98	52.7
HORVU4Hr1G005990.3	Barley	cytosol	45.49	50.0
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	46.62	49.4
TraesCS4B01G038000.1	Wheat	cytosol	44.74	48.57
TraesCS4D01G035300.1	Wheat	cytosol	44.74	48.57
EER93613	Sorghum	cytosol, nucleus, plastid	45.86	48.41
TraesCS4A01G275700.1	Wheat	plastid	44.74	47.98
HORVU4Hr1G016970.1	Barley	cytosol, plastid	12.03	33.33
HORVU5Hr1G125580.1	Barley	cytosol, plastid	8.27	30.99
HORVU5Hr1G020010.1	Barley	mitochondrion	9.4	29.41
HORVU1Hr1G055850.1	Barley	cytosol	13.16	26.92
HORVU3Hr1G108470.1	Barley	cytosol	15.04	25.0
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	11.65	14.16

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100242661	wikigene:100242661	Gene3D:3.10.350.10	MapMan:35.1	ProteinID:CCB59923
ProteinID:CCB59923.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HZ09	EMBL:FN596501	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	EntrezGene:LOC100242661
wikigene:LOC100242661	InterPro:LysM_dom	InterPro:LysM_dom_sf	PFAM:PF01476	PFAM:PF12937	PFscan:PS51782
PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383	TIGR:TC62574
UniParc:UPI0001984A5D	ArrayExpress:VIT_14s0128g00770	EnsemblPlantsGene:VIT_14s0128g00770	EnsemblPlants:VIT_14s0128g00770.t01	unigene:Vvi.2266	RefSeq:XP_002284540
RefSeq:XP_002284540.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:3294560..3298517

Molecular Weight (calculated)

29630.4 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.190

Length

266 amino acids

Sequence
(BLAST)

001: MGCCGDEEEE FLKHLMPNFS ETLTLGSTFQ ASTSGDSDAV ISAMNSHFSA LTCQDVLRGI FERLPVADLA RASCVCRVWN LVASDRGIQV RAFRAPWKLK
101: DVVGIPSSGS FWRDDSLGKF AISHRLVRGD SVASLAVKYS VQVMDIKRLN NMMSDHGIYS RERLLIPVSK PDILINAICY IELDSYAKRE VAVLYLEGGP
201: DKKLNSLLNK VSSEQGRRRV IESLKRSMQI DDGTAQYYLS ISNGDPRAAI SEFSEDLRWE RHAGLS

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.