Factsheet for HORVU4Hr1G005990.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	51.24	100.0
TraesCS4B01G038000.1	Wheat	cytosol	90.5	89.39
TraesCS4D01G035300.1	Wheat	cytosol	90.08	88.98
TraesCS4A01G275700.1	Wheat	plastid	89.67	87.5
HORVU4Hr1G016970.1	Barley	cytosol, plastid	34.71	87.5
HORVU5Hr1G125580.1	Barley	cytosol, plastid	24.79	84.51
Os03t0699600-01	Rice	cytosol	73.55	80.18
EER93613	Sorghum	cytosol, nucleus, plastid	76.45	73.41
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	74.38	71.71
HORVU3Hr1G108470.1	Barley	cytosol	38.43	58.12
HORVU1Hr1G055850.1	Barley	cytosol	30.17	56.15
HORVU5Hr1G020010.1	Barley	mitochondrion	19.42	55.29
GSMUA_Achr7P27060_001	Banana	nucleus	57.85	52.04
GSMUA_Achr4P06870_001	Banana	nucleus	56.2	50.94
AT1G55000.1	Thale cress	extracellular	45.04	49.32
VIT_14s0128g00770.t01	Wine grape	cytosol	50.0	45.49
CDX71564	Canola	cytosol	47.11	43.85
KRH33942	Soybean	plastid	47.52	43.73
CDY45130	Canola	cytosol	46.28	43.08
Bra038977.1-P	Field mustard	cytosol	46.28	43.08
Solyc01g099130.2.1	Tomato	cytosol	46.69	42.16
PGSC0003DMT400063440	Potato	cytosol	45.87	41.42
KRG92859	Soybean	cytosol	47.52	41.22

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	UniProt:A0A287N1Z0	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G005990	EnsemblPlants:HORVU4Hr1G005990.3	InterPro:IPR001810
InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	PFAM:PF00646	PFAM:PF01476
PFscan:PS50181	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SMART:SM00256	SUPFAM:SSF54106
SUPFAM:SSF81383	UniParc:UPI000B472CB2	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:14415938..14417911

Molecular Weight (calculated)

26974.0 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.469

Length

242 amino acids

Sequence
(BLAST)

001: MTSRAGDRAL PDKPDPEEPS PMGGGDFPAD LLRAVLHRLP PADVARAACV CRLWRAVASD RAVLEAAFRA PWGVRRVLGD PATRAFWRAA SLARFALSHT
101: VRRGDTVPGV ALKYSVQQVT DIKRFNNMMS DHGIYSRERL LIPISDPEIL LGSTCYIEMD HNSKREVAVF YPEGHPNGNT ESVTNAAAAK RQSKRILESV
201: RRSLQVDDGT AEYYLSITDG DPRAAMMEFS EDLRWEQRQK GH

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.