Factsheet for TraesCS4A01G275700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	47.18	94.35
TraesCS4D01G035300.1	Wheat	cytosol	92.34	93.47
HORVU4Hr1G005990.3	Barley	cytosol	87.5	89.67
TraesCS4B01G038000.1	Wheat	cytosol	87.1	88.16
Os03t0699600-01	Rice	cytosol	71.77	80.18
EER93613	Sorghum	cytosol, nucleus, plastid	77.42	76.19
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	75.81	74.9
GSMUA_Achr4P06870_001	Banana	nucleus	54.44	50.56
GSMUA_Achr7P27060_001	Banana	nucleus	54.44	50.19
AT1G55000.1	Thale cress	extracellular	43.55	48.87
KRH33942	Soybean	plastid	47.58	44.87
VIT_14s0128g00770.t01	Wine grape	cytosol	47.98	44.74
CDX71564	Canola	cytosol	45.97	43.85
Bra038977.1-P	Field mustard	cytosol	45.16	43.08
CDY45130	Canola	cytosol	45.16	43.08
KRG92859	Soybean	cytosol	47.98	42.65
Solyc01g099130.2.1	Tomato	cytosol	45.97	42.54
PGSC0003DMT400063440	Potato	cytosol	45.16	41.79
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	25.4	28.77

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PFAM:PF00646	PFAM:PF01476	PFscan:PS50181	PFscan:PS51782	PANTHER:PTHR20932
PANTHER:PTHR20932:SF8	SMART:SM00256	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS4A01G275700
EnsemblPlants:TraesCS4A01G275700.1	TIGR:cd00118	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:584672019..584675743

Molecular Weight (calculated)

27215.4 Da

IEP (calculated)

9.466

GRAVY (calculated)

-0.338

Length

248 amino acids

Sequence
(BLAST)

001: MSSRAGDVAG HALPTSPATK PGPEAPSPMS GGDFPADLLR AVLHRLPPAD VARAACVCRL WRAVASDRAV LEAAFRAPWG VRRVLGDPAT RAFWRAASLA
101: RFALSHTVRR GDTVPGVALK YSVQVTDIKR FNNMMSDHGI YSRERLLIPI SDPEILLGST CYIEMDHNSK REVAVFYPEG HPNRNAESVA NAAAAKRQSK
201: RILESVRRSL HVDDGTAEYY LSVTGGDPRA AMMEFSEDLR WEQRQAGH

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.