Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 4
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71564 | Canola | cytosol | 85.52 | 72.69 |
| CDY45130 | Canola | cytosol | 85.52 | 72.69 |
| Bra038977.1-P | Field mustard | cytosol | 85.52 | 72.69 |
| HORVU0Hr1G030190.1 | Barley | cytosol, nucleus | 33.03 | 58.87 |
| VIT_14s0128g00770.t01 | Wine grape | cytosol | 66.52 | 55.26 |
| Solyc01g099130.2.1 | Tomato | cytosol | 63.8 | 52.61 |
| PGSC0003DMT400063440 | Potato | cytosol | 63.8 | 52.61 |
| KRH33942 | Soybean | plastid | 59.73 | 50.19 |
| KRG92859 | Soybean | cytosol | 60.18 | 47.67 |
| Os03t0699600-01 | Rice | cytosol | 47.06 | 46.85 |
| HORVU4Hr1G005990.3 | Barley | cytosol | 49.32 | 45.04 |
| Zm00001d033621_P001 | Maize | cytosol, nucleus, plastid | 50.68 | 44.62 |
| GSMUA_Achr4P06870_001 | Banana | nucleus | 53.85 | 44.57 |
| EER93613 | Sorghum | cytosol, nucleus, plastid | 50.68 | 44.44 |
| TraesCS4B01G038000.1 | Wheat | cytosol | 48.87 | 44.08 |
| TraesCS4D01G035300.1 | Wheat | cytosol | 48.42 | 43.67 |
| TraesCS4A01G275700.1 | Wheat | plastid | 48.87 | 43.55 |
| GSMUA_Achr7P27060_001 | Banana | nucleus | 52.49 | 43.12 |
| HORVU5Hr1G020010.1 | Barley | mitochondrion | 9.95 | 25.88 |
| HORVU4Hr1G016970.1 | Barley | cytosol, plastid | 10.41 | 23.96 |
| HORVU1Hr1G055850.1 | Barley | cytosol | 12.67 | 21.54 |
| HORVU5Hr1G125580.1 | Barley | cytosol, plastid | 6.33 | 19.72 |
| HORVU3Hr1G108470.1 | Barley | cytosol | 14.03 | 19.38 |
| TraesCS7A01G188000.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 11.31 | 11.42 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.10.350.10 | MapMan:35.1 | EntrezGene:841942 | UniProt:A0A178W626 | ProteinID:AAG00879.1 |
| ProteinID:AAG51120.1 | ProteinID:AEE33171.1 | ProteinID:AEE33172.1 | ProteinID:AEE33173.1 | EMBL:AF424604 | EMBL:AK316995 |
| EMBL:AK317053 | ArrayExpress:AT1G55000 | EnsemblPlantsGene:AT1G55000 | RefSeq:AT1G55000 | TAIR:AT1G55000 | RefSeq:AT1G55000-TAIR-G |
| EnsemblPlants:AT1G55000.1 | TAIR:AT1G55000.1 | EMBL:AY087755 | EMBL:AY124829 | Unigene:At.16087 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | InterPro:IPR018392 |
| InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | RefSeq:NP_001031192.1 | RefSeq:NP_001031193.1 | RefSeq:NP_564673.1 |
| ProteinID:OAP13748.1 | PFAM:PF01476 | PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF8 | UniProt:Q9FZ32 | SMART:SM00257 | SUPFAM:SSF54106 |
| SUPFAM:SSF81383 | UniParc:UPI00000A1DEB | : | : | : | : |
Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
Coordinates
chr1:+:20514634..20516558
Molecular Weight (calculated)
24904.9 Da
IEP (calculated)
8.458
GRAVY (calculated)
-0.166
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.