CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33942	Soybean	plastid	87.46	92.78
VIT_14s0128g00770.t01	Wine grape	cytosol	60.22	63.16
PGSC0003DMT400063440	Potato	cytosol	60.22	62.69
Solyc01g099130.2.1	Tomato	cytosol	59.86	62.31
AT1G55000.1	Thale cress	extracellular	47.67	60.18
CDY45130	Canola	cytosol	55.2	59.23
Bra038977.1-P	Field mustard	cytosol	54.84	58.85
CDX71564	Canola	cytosol	52.69	56.54
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	24.73	55.65
GSMUA_Achr7P27060_001	Banana	nucleus	51.61	53.53
GSMUA_Achr4P06870_001	Banana	nucleus	50.54	52.81
Os03t0699600-01	Rice	cytosol	40.86	51.35
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	45.16	50.2
EER93613	Sorghum	cytosol, nucleus, plastid	44.09	48.81
TraesCS4D01G035300.1	Wheat	cytosol	42.65	48.57
TraesCS4A01G275700.1	Wheat	plastid	42.65	47.98
HORVU4Hr1G005990.3	Barley	cytosol	41.22	47.52
TraesCS4B01G038000.1	Wheat	cytosol	41.22	46.94
HORVU4Hr1G016970.1	Barley	cytosol, plastid	11.47	33.33
HORVU5Hr1G020010.1	Barley	mitochondrion	10.04	32.94
HORVU5Hr1G125580.1	Barley	cytosol, plastid	7.53	29.58
HORVU1Hr1G055850.1	Barley	cytosol	12.54	26.92
HORVU3Hr1G108470.1	Barley	cytosol	14.34	25.0
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	11.83	15.07

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100783874	Gene3D:3.10.350.10	MapMan:35.1	EMBL:ACUP02012768	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_20G234300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NIZ6
InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	EnsemblPlants:KRG92859	ProteinID:KRG92859	ProteinID:KRG92859.1
InterPro:LysM_dom	InterPro:LysM_dom_sf	PFAM:PF01476	PFAM:PF12937	PFscan:PS51782	PANTHER:PTHR20932
PANTHER:PTHR20932:SF8	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383	UniParc:UPI0002961BD0	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:46686964..46690639

Molecular Weight (calculated)

31577.6 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.219

Length

279 amino acids

Sequence
(BLAST)

001: MKVYPLKDLL FSRNLTPLPM GCCCDEDDGD IFRHLMNSNF PSSSSSTSSS CTVISPMNSH FSALSSTDIL RLIFENLPII DLARASCVCR LWCSVASQRD
101: MVTRAFVAPW KLNDVVGNPL SGSFWRDNSL AKFAISHRIT RGDTVASLAV KYSVQVMDIK RLNNMMSDHG IYSRERLLIP ISNPDILINR RCFIELDVYA
201: KREVAVLYPN DVPDRRTTYV SNRISSEESN KKVLESLKRS MHVDNETAQY YWSVANGDPR AAFAEFSADL KWDWQAGHS

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.