CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
vacuole 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92859	Soybean	cytosol	92.78	87.46
PGSC0003DMT400063440	Potato	cytosol	63.88	62.69
Solyc01g099130.2.1	Tomato	cytosol	63.5	62.31
VIT_14s0128g00770.t01	Wine grape	cytosol	62.74	62.03
AT1G55000.1	Thale cress	extracellular	50.19	59.73
CDY45130	Canola	cytosol	58.94	59.62
Bra038977.1-P	Field mustard	cytosol	58.56	59.23
CDX71564	Canola	cytosol	56.27	56.92
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	26.24	55.65
GSMUA_Achr7P27060_001	Banana	nucleus	55.13	53.9
GSMUA_Achr4P06870_001	Banana	nucleus	53.61	52.81
Os03t0699600-01	Rice	cytosol	43.73	51.8
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	47.15	49.4
TraesCS4D01G035300.1	Wheat	cytosol	45.25	48.57
EER93613	Sorghum	cytosol, nucleus, plastid	46.01	48.02
TraesCS4A01G275700.1	Wheat	plastid	44.87	47.58
HORVU4Hr1G005990.3	Barley	cytosol	43.73	47.52
TraesCS4B01G038000.1	Wheat	cytosol	43.35	46.53
HORVU4Hr1G016970.1	Barley	cytosol, plastid	12.17	33.33
HORVU5Hr1G020010.1	Barley	mitochondrion	10.27	31.76
HORVU5Hr1G125580.1	Barley	cytosol, plastid	7.98	29.58
HORVU1Hr1G055850.1	Barley	cytosol	13.69	27.69
HORVU3Hr1G108470.1	Barley	cytosol	14.83	24.38
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	12.55	15.07

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100803417	Gene3D:3.10.350.10	MapMan:35.1	EMBL:ACUP02006566	EMBL:BT097256
UniProt:C6THY0	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G154000	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	ProteinID:KRH33941.1	EnsemblPlants:KRH33942
ProteinID:KRH33942	ProteinID:KRH33942.1	InterPro:LysM_dom	InterPro:LysM_dom_sf	PFAM:PF01476	PFAM:PF12937
PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383
UniParc:UPI0001B168FF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:38910538..38913472

Molecular Weight (calculated)

29512.8 Da

IEP (calculated)

6.856

GRAVY (calculated)

-0.254

Length

263 amino acids

Sequence
(BLAST)

001: MGCCCDEDDG DIFRHLMNSN FPSSSSTSAT TTSSCTVISP MNSHFSALSS TDILRLIFDN LPIPDLARAS CVCRLWNSVA SQRDMVTRAF VAPWKLNDVV
101: GNPLSGSFWR DNSLAKFAVS HHITRGDTVA SLAVKYSVQV MDIKRLNNMM SDHGIYSRER LLIPISNPDI LINRTCFIEL DVYAKREVAV LYPNDLPDRR
201: TAYVSNRISS EESNKKVLES LKRSMHVDNE TAQYYWSVAN GDPRAAFAQF SADLKWDWQA GHS

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.