Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G020010.1 | Barley | mitochondrion | 13.7 | 35.29 |
| TraesCS4A01G275700.1 | Wheat | plastid | 28.77 | 25.4 |
| Os03t0699600-01 | Rice | cytosol | 25.57 | 25.23 |
| Zm00001d033621_P001 | Maize | cytosol, nucleus, plastid | 26.94 | 23.51 |
| EER93613 | Sorghum | cytosol, nucleus, plastid | 26.03 | 22.62 |
| GSMUA_Achr7P27060_001 | Banana | nucleus | 19.18 | 15.61 |
| GSMUA_Achr4P06870_001 | Banana | nucleus | 17.35 | 14.23 |
| KRH33942 | Soybean | plastid | 15.07 | 12.55 |
| KRG92859 | Soybean | cytosol | 15.07 | 11.83 |
| VIT_14s0128g00770.t01 | Wine grape | cytosol | 14.16 | 11.65 |
| AT1G55000.1 | Thale cress | extracellular | 11.42 | 11.31 |
| Bra038977.1-P | Field mustard | cytosol | 13.24 | 11.15 |
| CDX71564 | Canola | cytosol | 13.24 | 11.15 |
| CDY45130 | Canola | cytosol | 13.24 | 11.15 |
| PGSC0003DMT400063440 | Potato | cytosol | 12.33 | 10.07 |
| Solyc01g099130.2.1 | Tomato | cytosol | 12.33 | 10.07 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G188000.1 | EnsemblPlantsGene:TraesCS7A01G188000 | ncoils:Coil | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr7A:-:143849789..143851835
Molecular Weight (calculated)
24650.6 Da
IEP (calculated)
8.823
GRAVY (calculated)
0.355
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMLLVSLVF PLVFLGWSLL FFRVQQLMVI CPKQKLVSNV AYLIEQKCQK QITLMFMCYV LCFAAADLFL WRNKKIFVGV LTGATAIWLL FEEKKEHTQE
101: KEQAQEKKSE QEKKALDCCC WSVEDLGSVT ALHRLPPADV VRAACACRLL STVASDRAVL EATFHAPSGM RHVLSDPATR AFWHAASLAQ FALSRALRRG
201: VTVPGIALKY FVQLGVQEL
101: KEQAQEKKSE QEKKALDCCC WSVEDLGSVT ALHRLPPADV VRAACACRLL STVASDRAVL EATFHAPSGM RHVLSDPATR AFWHAASLAQ FALSRALRRG
201: VTVPGIALKY FVQLGVQEL
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.