Factsheet for PGSC0003DMT400063440

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099130.2.1	Tomato	cytosol	97.39	97.39
VIT_14s0128g00770.t01	Wine grape	cytosol	64.18	64.66
KRH33942	Soybean	plastid	62.69	63.88
AT1G55000.1	Thale cress	extracellular	52.61	63.8
KRG92859	Soybean	cytosol	62.69	60.22
Bra038977.1-P	Field mustard	cytosol	57.46	59.23
CDY45130	Canola	cytosol	57.46	59.23
CDX71564	Canola	cytosol	55.97	57.69
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	25.37	54.84
GSMUA_Achr4P06870_001	Banana	nucleus	54.1	54.31
GSMUA_Achr7P27060_001	Banana	nucleus	54.48	54.28
Os03t0699600-01	Rice	cytosol	40.67	49.1
HORVU4Hr1G005990.3	Barley	cytosol	41.42	45.87
TraesCS4D01G035300.1	Wheat	cytosol	41.79	45.71
TraesCS4A01G275700.1	Wheat	plastid	41.79	45.16
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	42.16	45.02
TraesCS4B01G038000.1	Wheat	cytosol	41.04	44.9
EER93613	Sorghum	cytosol, nucleus, plastid	42.16	44.84
HORVU5Hr1G020010.1	Barley	mitochondrion	10.07	31.76
HORVU4Hr1G016970.1	Barley	cytosol, plastid	11.19	31.25
HORVU5Hr1G125580.1	Barley	cytosol, plastid	6.72	25.35
HORVU1Hr1G055850.1	Barley	cytosol	11.94	24.62
HORVU3Hr1G108470.1	Barley	cytosol	13.43	22.5
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	10.07	12.33

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102587889	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	UniProt:M1CAP2	PFAM:PF00646	PFAM:PF01476	EnsemblPlantsGene:PGSC0003DMG400024687
PGSC:PGSC0003DMG400024687	EnsemblPlants:PGSC0003DMT400063440	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SUPFAM:SSF54106
SUPFAM:SSF81383	UniParc:UPI00029685EB	RefSeq:XP_006344617.1	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024687]

Coordinates

chr1:+:76935646..76938498

Molecular Weight (calculated)

29874.5 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.283

Length

268 amino acids

Sequence
(BLAST)

001: MGCCCDDDEQ LLQPLNPSEI QNSDQIPPSA SSTTVVHGGE AVISPMNSHF SALICHDTLR AILEKLALPD LARAACVSRI WNFVASDREL QTKAFKDPWK
101: IKDVIGDPSS GSFWRDNSLS KFAISHRIVR GDSVASLAVK YSVHVMGIKR LNNMMSDHGI YSRDRLLIPI SNPDCLINGT CYIELDIYAK REVAVLYLDG
201: GPDPKLTTML NRLTSERSKK RVIDSLRRSM QVDGETAQYY FAVSDGDPRS AFSQFSEDLK WEREAGLT

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.