Factsheet for GSMUA_Achr7P27060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06870_001	Banana	nucleus	76.21	76.78
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	29.74	64.52
Os03t0699600-01	Rice	cytosol	49.07	59.46
HORVU4Hr1G005990.3	Barley	cytosol	52.04	57.85
TraesCS4D01G035300.1	Wheat	cytosol	51.3	56.33
VIT_14s0128g00770.t01	Wine grape	cytosol	55.02	55.64
TraesCS4B01G038000.1	Wheat	cytosol	50.56	55.51
Solyc01g099130.2.1	Tomato	cytosol	55.02	55.22
KRH33942	Soybean	plastid	53.9	55.13
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	51.3	54.98
PGSC0003DMT400063440	Potato	cytosol	54.28	54.48
TraesCS4A01G275700.1	Wheat	plastid	50.19	54.44
EER93613	Sorghum	cytosol, nucleus, plastid	50.93	54.37
AT1G55000.1	Thale cress	extracellular	43.12	52.49
KRG92859	Soybean	cytosol	53.53	51.61
Bra038977.1-P	Field mustard	cytosol	46.84	48.46
CDY45130	Canola	cytosol	46.84	48.46
CDX71564	Canola	cytosol	46.47	48.08
HORVU4Hr1G016970.1	Barley	cytosol, plastid	16.36	45.83
HORVU5Hr1G125580.1	Barley	cytosol, plastid	11.52	43.66
HORVU5Hr1G020010.1	Barley	mitochondrion	11.52	36.47
HORVU1Hr1G055850.1	Barley	cytosol	15.99	33.08
HORVU3Hr1G108470.1	Barley	cytosol	18.59	31.25
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	15.61	19.18

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G27060_001	EnsemblPlants:GSMUA_Achr7P27060_001	EnsemblPlants:GSMUA_Achr7T27060_001	InterPro:IPR001810
InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	UniProt:M0TL42	PFAM:PF00646
PFAM:PF01476	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SUPFAM:SSF54106	SUPFAM:SSF81383
UniParc:UPI0002956EBE	:	:	:	:	:

Description

F-box protein At1g55000 [Source:GMGC_GENE;Acc:GSMUA_Achr7G27060_001]

Coordinates

chr7:-:28218647..28221813

Molecular Weight (calculated)

30263.3 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.345

Length

269 amino acids

Sequence
(BLAST)

001: MGCCGGDEDD DLVKQLLPPD SDPGANPSPD PFLASSSEVL SPMNSNFSAL ASRDLLRAIL ELLPPADLAR SACVCRLWRA VASEREMLER AFRAPWKVRR
101: VLGEPSSSAF WHHLSLDRFA ISHRLRRGDT VASLALRYSV QVMGIKRLNN MMSDHGIYSR ERLLIPIGKP ELLLNSTCYV EMDEHARREV AVLYLDGGPD
201: GKTCNPTNRA ITERGKRKIL NSVIRSLQVD YGTAEFYLSV WNGDPRAAMS QFTEDLRWEQ QTMRPRLFG

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.