Factsheet for TraesCS4B01G038000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	46.94	92.74
HORVU4Hr1G005990.3	Barley	cytosol	89.39	90.5
TraesCS4D01G035300.1	Wheat	cytosol	88.16	88.16
TraesCS4A01G275700.1	Wheat	plastid	88.16	87.1
Os03t0699600-01	Rice	cytosol	72.65	80.18
EER93613	Sorghum	cytosol, nucleus, plastid	76.33	74.21
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	74.69	72.91
GSMUA_Achr4P06870_001	Banana	nucleus	55.51	50.94
GSMUA_Achr7P27060_001	Banana	nucleus	55.51	50.56
AT1G55000.1	Thale cress	extracellular	44.08	48.87
VIT_14s0128g00770.t01	Wine grape	cytosol	48.57	44.74
KRH33942	Soybean	plastid	46.53	43.35
Bra038977.1-P	Field mustard	cytosol	44.49	41.92
CDY45130	Canola	cytosol	44.49	41.92
CDX71564	Canola	cytosol	44.49	41.92
Solyc01g099130.2.1	Tomato	cytosol	45.71	41.79
KRG92859	Soybean	cytosol	46.94	41.22
PGSC0003DMT400063440	Potato	cytosol	44.9	41.04

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PFAM:PF00646	PFAM:PF01476	PFscan:PS50181	PFscan:PS51782	PANTHER:PTHR20932
PANTHER:PTHR20932:SF8	SMART:SM00256	SUPFAM:SSF54106	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS4B01G038000	EnsemblPlants:TraesCS4B01G038000.1
TIGR:cd00118	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:27526636..27528457

Molecular Weight (calculated)

26886.9 Da

IEP (calculated)

8.827

GRAVY (calculated)

-0.342

Length

245 amino acids

Sequence
(BLAST)

001: MSSRAGDRAL PASSPTEPDP EAPSAVSGGD FPADLLRAVL HRLPPADVAR AACVCRLWRA VASDRAVLEA AFRAPWGVRR VLGDPATRAF WRAASLARFA
101: LSHAVRRGDT VPGVALKYSV QVTDIKRFNN MMSDHGIYSR ERLLIPISNP EILLGSTCYI EMDHNSKREV AVFYPEGHPN GNAESMANAA AAKRQSKRIL
201: ESVRRSLHVD DGTAEYYLSV TGGDPRAAMM EFSEDLRWEQ RQAGQ

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.