CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	92.46	92.83
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	40.48	82.26
Os03t0699600-01	Rice	cytosol	69.84	79.28
TraesCS4D01G035300.1	Wheat	cytosol	75.79	77.96
TraesCS4A01G275700.1	Wheat	plastid	76.19	77.42
HORVU4Hr1G005990.3	Barley	cytosol	73.41	76.45
TraesCS4B01G038000.1	Wheat	cytosol	74.21	76.33
HORVU4Hr1G016970.1	Barley	cytosol, plastid	23.41	61.46
HORVU5Hr1G125580.1	Barley	cytosol, plastid	15.48	54.93
GSMUA_Achr4P06870_001	Banana	nucleus	54.76	51.69
GSMUA_Achr7P27060_001	Banana	nucleus	54.37	50.93
AT1G55000.1	Thale cress	extracellular	44.44	50.68
HORVU5Hr1G020010.1	Barley	mitochondrion	15.87	47.06
KRH33942	Soybean	plastid	48.02	46.01
VIT_14s0128g00770.t01	Wine grape	cytosol	48.41	45.86
CDY45130	Canola	cytosol	46.43	45.0
CDX71564	Canola	cytosol	46.43	45.0
Bra038977.1-P	Field mustard	cytosol	46.43	45.0
HORVU1Hr1G055850.1	Barley	cytosol	23.02	44.62
KRG92859	Soybean	cytosol	48.81	44.09
Solyc01g099130.2.1	Tomato	cytosol	45.63	42.91
PGSC0003DMT400063440	Potato	cytosol	44.84	42.16
HORVU3Hr1G108470.1	Barley	cytosol	25.4	40.0
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	22.62	26.03

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	EntrezGene:8066027	UniProt:C5WNV0	EnsemblPlants:EER93613
ProteinID:EER93613	ProteinID:EER93613.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf
PFAM:PF00646	PFAM:PF01476	PFscan:PS50181	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8
SMART:SM00256	EnsemblPlantsGene:SORBI_3001G126100	SUPFAM:SSF54106	SUPFAM:SSF81383	unigene:Sbi.11056	UniParc:UPI0001A82916
RefSeq:XP_002466615.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9929171..9932579

Molecular Weight (calculated)

27330.5 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.298

Length

252 amino acids

Sequence
(BLAST)

001: MDSRAVGDGA GGGPDASSPA DPPSPEPDPS AGSMDARLPA DLLRAVLQRL PPIDLARSAC VCRAWRAVAS DRAVVEAAFC APWGVRRVVG EPATGAFWRT
101: ACLGRFALSH AVRRGDTVPG VALKYSVQVT DIKRFNNMMS DHGIYSRERL LIPISNPEIL MGSTCYIEMD HNAKREVAIF YPEGRPGGKT ESVASIVAAE
201: RRSKRILESV RRSLHVDDGT AAYYLSVTEG DPRAAMMEYS EDLRWEQQRA GG

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.