Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G016970.1 | Barley | cytosol, plastid | 49.23 | 66.67 |
| HORVU5Hr1G125580.1 | Barley | cytosol, plastid | 28.46 | 52.11 |
| HORVU3Hr1G108470.1 | Barley | cytosol | 48.46 | 39.38 |
| HORVU5Hr1G020010.1 | Barley | mitochondrion | 20.77 | 31.76 |
| HORVU4Hr1G005990.3 | Barley | cytosol | 56.15 | 30.17 |
| Os03t0699600-01 | Rice | cytosol | 50.77 | 29.73 |
| Zm00001d033621_P001 | Maize | cytosol, nucleus, plastid | 44.62 | 23.11 |
| EER93613 | Sorghum | cytosol, nucleus, plastid | 44.62 | 23.02 |
| GSMUA_Achr7P27060_001 | Banana | nucleus | 33.08 | 15.99 |
| GSMUA_Achr4P06870_001 | Banana | nucleus | 31.54 | 15.36 |
| KRH33942 | Soybean | plastid | 27.69 | 13.69 |
| VIT_14s0128g00770.t01 | Wine grape | cytosol | 26.92 | 13.16 |
| CDY45130 | Canola | cytosol | 25.38 | 12.69 |
| Bra038977.1-P | Field mustard | cytosol | 25.38 | 12.69 |
| AT1G55000.1 | Thale cress | extracellular | 21.54 | 12.67 |
| KRG92859 | Soybean | cytosol | 26.92 | 12.54 |
| PGSC0003DMT400063440 | Potato | cytosol | 24.62 | 11.94 |
| Solyc01g099130.2.1 | Tomato | cytosol | 24.62 | 11.94 |
| CDX71564 | Canola | cytosol | 23.85 | 11.92 |
| HORVU0Hr1G030190.1 | Barley | cytosol, nucleus | 3.85 | 4.03 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G055850.1 | EnsemblPlantsGene:HORVU1Hr1G055850 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PFAM:PF00646 | PFscan:PS50181 | SEG:seg |
| SUPFAM:SSF81383 | UniParc:UPI000B468EED | UniProt:A0A287FPY4 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:409265651..409266163
Molecular Weight (calculated)
14488.7 Da
IEP (calculated)
10.683
GRAVY (calculated)
0.089
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAHDFPADL LRAVLHRLPP VDVALAACVC RLWRAITSDR AVLEAAFRAP WGVRRVLGDP ATRAFWRAAS LARVVRVTVA DVDNIRGFSV KCKKRSVFLT
101: QKGPQVKYWK SEGCFCKITA TDDRSAPCFI
101: QKGPQVKYWK SEGCFCKITA TDDRSAPCFI
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.