Factsheet for GSMUA_Achr4P06870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P27060_001	Banana	nucleus	76.78	76.21
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	29.59	63.71
Os03t0699600-01	Rice	cytosol	49.06	59.01
VIT_14s0128g00770.t01	Wine grape	cytosol	56.93	57.14
HORVU4Hr1G005990.3	Barley	cytosol	50.94	56.2
TraesCS4D01G035300.1	Wheat	cytosol	50.94	55.51
TraesCS4B01G038000.1	Wheat	cytosol	50.94	55.51
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	52.06	55.38
Solyc01g099130.2.1	Tomato	cytosol	55.06	54.85
EER93613	Sorghum	cytosol, nucleus, plastid	51.69	54.76
TraesCS4A01G275700.1	Wheat	plastid	50.56	54.44
PGSC0003DMT400063440	Potato	cytosol	54.31	54.1
AT1G55000.1	Thale cress	extracellular	44.57	53.85
KRH33942	Soybean	plastid	52.81	53.61
KRG92859	Soybean	cytosol	52.81	50.54
Bra038977.1-P	Field mustard	cytosol	48.69	50.0
CDY45130	Canola	cytosol	48.69	50.0
CDX71564	Canola	cytosol	47.94	49.23
HORVU4Hr1G016970.1	Barley	cytosol, plastid	14.23	39.58
HORVU5Hr1G020010.1	Barley	mitochondrion	11.98	37.65
HORVU5Hr1G125580.1	Barley	cytosol, plastid	9.36	35.21
HORVU1Hr1G055850.1	Barley	cytosol	15.36	31.54
HORVU3Hr1G108470.1	Barley	cytosol	17.6	29.38
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	14.23	17.35

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G06870_001	EnsemblPlants:GSMUA_Achr4P06870_001	EnsemblPlants:GSMUA_Achr4T06870_001	InterPro:IPR001810
InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	UniProt:M0SLQ4	PFAM:PF00646
PFAM:PF01476	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SUPFAM:SSF54106	SUPFAM:SSF81383
UniParc:UPI000294EADD	SEG:seg	:	:	:	:

Description

F-box protein At1g55000 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06870_001]

Coordinates

chr4:-:5138717..5142230

Molecular Weight (calculated)

30274.2 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.472

Length

267 amino acids

Sequence
(BLAST)

001: MGRCGGDEDE DVLKQLLAPI SDLDLNPDLS LSSSSSYSEG LLSPMNSNFS ALGSPDLLRA ILELLPPGDL ARSACVCRMW RAVASDREMK EWAFREPWKV
101: RRVLGEPSSV AFWRHPGLDR FAISHRLRRG DTVPGLALRY SVQVMDIRRL NNMMSDHGIY SRERLLIPIS KPELLLNRTC YIELDEHAKR EVVVLYLEGG
201: PDGKAGYPAN RTITERGKRK IFNSVKRSMQ VDDGTAEYYL SVSDGDPRAA MLQFTEDLRW EQQNRDT

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.