Factsheet for Zm00001d033621_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93613	Sorghum	cytosol, nucleus, plastid	92.83	92.46
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	39.04	79.03
Os03t0699600-01	Rice	cytosol	68.92	77.93
TraesCS4D01G035300.1	Wheat	cytosol	74.5	76.33
TraesCS4A01G275700.1	Wheat	plastid	74.9	75.81
TraesCS4B01G038000.1	Wheat	cytosol	72.91	74.69
HORVU4Hr1G005990.3	Barley	cytosol	71.71	74.38
HORVU4Hr1G016970.1	Barley	cytosol, plastid	23.51	61.46
HORVU5Hr1G125580.1	Barley	cytosol, plastid	15.54	54.93
GSMUA_Achr4P06870_001	Banana	nucleus	55.38	52.06
GSMUA_Achr7P27060_001	Banana	nucleus	54.98	51.3
AT1G55000.1	Thale cress	extracellular	44.62	50.68
HORVU5Hr1G020010.1	Barley	mitochondrion	16.33	48.24
KRH33942	Soybean	plastid	49.4	47.15
VIT_14s0128g00770.t01	Wine grape	cytosol	49.4	46.62
KRG92859	Soybean	cytosol	50.2	45.16
CDX71564	Canola	cytosol	46.61	45.0
HORVU1Hr1G055850.1	Barley	cytosol	23.11	44.62
CDY45130	Canola	cytosol	46.22	44.62
Bra038977.1-P	Field mustard	cytosol	46.22	44.62
Solyc01g099130.2.1	Tomato	cytosol	45.82	42.91
PGSC0003DMT400063440	Potato	cytosol	45.02	42.16
HORVU3Hr1G108470.1	Barley	cytosol	26.69	41.88
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	23.51	26.94

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	UniProt:A0A1D6L0I7	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	ProteinID:ONM08079.1	PFAM:PF00646	PFAM:PF01476	PFscan:PS50181
PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SMART:SM00256	SUPFAM:SSF54106	SUPFAM:SSF81383
UniParc:UPI0002219D5E	EnsemblPlantsGene:Zm00001d033621	EnsemblPlants:Zm00001d033621_P001	EnsemblPlants:Zm00001d033621_T001	SEG:seg	:

Description

LysM domain containing protein

Coordinates

chr1:+:269015051..269019380

Molecular Weight (calculated)

27275.4 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.268

Length

251 amino acids

Sequence
(BLAST)

001: MDSRVVDGAG GGADASLPAD PPSPVPDPAA GGMDARLPSD LLRAVLQRLP PIDLARSACV CRAWRAVASD RAVVEAAFCA PWGVRRVVGE PATGAFWRAA
101: SLGRFALSHA IRRGDTVPGV ALKYSVQVTD IKRFNNMMSD HGIYSRERLL VPISNPEILL GSTCYIEMDH NAKREVAIFY PEGRPGGKTD SVASIVSAER
201: RNKRILESVR RSLHVDDGTA AYYLSVTEGD PRAAMTEYSE DLRWEQQRAG R

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.