Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G125580.1 | Barley | cytosol, plastid | 68.75 | 92.96 |
| HORVU3Hr1G108470.1 | Barley | cytosol | 95.83 | 57.5 |
| HORVU1Hr1G055850.1 | Barley | cytosol | 66.67 | 49.23 |
| HORVU4Hr1G005990.3 | Barley | cytosol | 87.5 | 34.71 |
| Os03t0699600-01 | Rice | cytosol | 57.29 | 24.77 |
| Zm00001d033621_P001 | Maize | cytosol, nucleus, plastid | 61.46 | 23.51 |
| EER93613 | Sorghum | cytosol, nucleus, plastid | 61.46 | 23.41 |
| HORVU5Hr1G020010.1 | Barley | mitochondrion | 18.75 | 21.18 |
| GSMUA_Achr7P27060_001 | Banana | nucleus | 45.83 | 16.36 |
| GSMUA_Achr4P06870_001 | Banana | nucleus | 39.58 | 14.23 |
| KRH33942 | Soybean | plastid | 33.33 | 12.17 |
| VIT_14s0128g00770.t01 | Wine grape | cytosol | 33.33 | 12.03 |
| KRG92859 | Soybean | cytosol | 33.33 | 11.47 |
| PGSC0003DMT400063440 | Potato | cytosol | 31.25 | 11.19 |
| Solyc01g099130.2.1 | Tomato | cytosol | 31.25 | 11.19 |
| CDY45130 | Canola | cytosol | 30.21 | 11.15 |
| CDX71564 | Canola | cytosol | 30.21 | 11.15 |
| Bra038977.1-P | Field mustard | cytosol | 30.21 | 11.15 |
| AT1G55000.1 | Thale cress | extracellular | 23.96 | 10.41 |
| HORVU0Hr1G030190.1 | Barley | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G016970.1 | EnsemblPlantsGene:HORVU4Hr1G016970 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31264 | PFAM:PF00646 | PFscan:PS50181 |
| SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000B4893DD | UniProt:A0A287NDN8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr4H:+:71827033..71827337
Molecular Weight (calculated)
10451.7 Da
IEP (calculated)
11.948
GRAVY (calculated)
-0.015
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MTSRAGDRAL PAKPNPEVPS PMSAHDFPAD LLRAVLHRLP PADVARAACV CRLWRAVASD RAVLEAAFRA PWGVRRVLGD PATRAFWRTA SLARVV
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.