Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G005990.3 | Barley | cytosol | 100.0 | 51.24 |
| TraesCS4D01G035300.1 | Wheat | cytosol | 94.35 | 47.76 |
| TraesCS4A01G275700.1 | Wheat | plastid | 94.35 | 47.18 |
| TraesCS4B01G038000.1 | Wheat | cytosol | 92.74 | 46.94 |
| Os03t0699600-01 | Rice | cytosol | 79.03 | 44.14 |
| EER93613 | Sorghum | cytosol, nucleus, plastid | 82.26 | 40.48 |
| Zm00001d033621_P001 | Maize | cytosol, nucleus, plastid | 79.03 | 39.04 |
| AT1G55000.1 | Thale cress | extracellular | 58.87 | 33.03 |
| GSMUA_Achr7P27060_001 | Banana | nucleus | 64.52 | 29.74 |
| GSMUA_Achr4P06870_001 | Banana | nucleus | 63.71 | 29.59 |
| VIT_14s0128g00770.t01 | Wine grape | cytosol | 60.48 | 28.2 |
| CDX71564 | Canola | cytosol | 57.26 | 27.31 |
| Bra038977.1-P | Field mustard | cytosol | 55.65 | 26.54 |
| CDY45130 | Canola | cytosol | 55.65 | 26.54 |
| KRH33942 | Soybean | plastid | 55.65 | 26.24 |
| Solyc01g099130.2.1 | Tomato | cytosol | 56.45 | 26.12 |
| PGSC0003DMT400063440 | Potato | cytosol | 54.84 | 25.37 |
| KRG92859 | Soybean | cytosol | 55.65 | 24.73 |
| HORVU5Hr1G020010.1 | Barley | mitochondrion | 6.45 | 9.41 |
| HORVU3Hr1G108470.1 | Barley | cytosol | 6.45 | 5.0 |
| HORVU1Hr1G055850.1 | Barley | cytosol | 4.03 | 3.85 |
| HORVU5Hr1G125580.1 | Barley | cytosol, plastid | 0.0 | 0.0 |
| HORVU4Hr1G016970.1 | Barley | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G030190.1 | EnsemblPlantsGene:HORVU0Hr1G030190 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF8 | UniParc:UPI000B477766 | UniProt:A0A287EA41 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:170866496..170866870
Molecular Weight (calculated)
14205.7 Da
IEP (calculated)
5.635
GRAVY (calculated)
-0.739
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: VTDIKRFNNM MSDHGIYSRE RLLIPISDPE ILLGSTCYIE MDHNSKREVA VFYPEGHPNG NTESVTNAAA AKRQSKRILE SVRRSLQVDD GTAEYYLSIT
101: DGDPRAAMME FSEDLRWEQR QKGH
101: DGDPRAAMME FSEDLRWEQR QKGH
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.