Factsheet for Bra038977.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
vacuole 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55000.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G55000.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G55000.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G55000.1	Bra012213.1-P	AT2G25700.1	12169662
AT1G55000.1	Bra012214.1-P	AT2G25700.1	12169662
AT1G55000.1	Bra012216.1-P	AT2G25700.1	12169662
AT1G55000.1	Bra025795.1-P	AT2G25700.1	12169662
AT1G55000.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G55000.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G55000.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45130	Canola	cytosol	99.23	99.23
AT1G55000.1	Thale cress	extracellular	72.69	85.52
VIT_14s0128g00770.t01	Wine grape	cytosol	61.15	59.77
KRH33942	Soybean	plastid	59.23	58.56
PGSC0003DMT400063440	Potato	cytosol	59.23	57.46
Solyc01g099130.2.1	Tomato	cytosol	58.85	57.09
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	26.54	55.65
KRG92859	Soybean	cytosol	58.85	54.84
GSMUA_Achr4P06870_001	Banana	nucleus	50.0	48.69
Os03t0699600-01	Rice	cytosol	40.77	47.75
GSMUA_Achr7P27060_001	Banana	nucleus	48.46	46.84
EER93613	Sorghum	cytosol, nucleus, plastid	45.0	46.43
HORVU4Hr1G005990.3	Barley	cytosol	43.08	46.28
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	44.62	46.22
TraesCS4D01G035300.1	Wheat	cytosol	43.08	45.71
TraesCS4A01G275700.1	Wheat	plastid	43.08	45.16
TraesCS4B01G038000.1	Wheat	cytosol	41.92	44.49
HORVU4Hr1G016970.1	Barley	cytosol, plastid	11.15	30.21
HORVU5Hr1G020010.1	Barley	mitochondrion	8.85	27.06
HORVU5Hr1G125580.1	Barley	cytosol, plastid	7.31	26.76
HORVU1Hr1G055850.1	Barley	cytosol	12.69	25.38
HORVU3Hr1G108470.1	Barley	cytosol	13.85	22.5
TraesCS7A01G188000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	11.15	13.24

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	EnsemblPlantsGene:Bra038977	EnsemblPlants:Bra038977.1	EnsemblPlants:Bra038977.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	UniProt:M4FD07	PFAM:PF01476
PFAM:PF12937	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF8	SMART:SM00257	SUPFAM:SSF54106
SUPFAM:SSF81383	UniParc:UPI000253E831	:	:	:	:

Description

AT1G55000 (E=5e-106) | peptidoglycan-binding LysM domain-containing protein

Coordinates

chrScaffold000157:-:101880..103520

Molecular Weight (calculated)

28914.5 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.138

Length

260 amino acids

Sequence
(BLAST)

001: MVCCCCDQSD GNDFLTESLI VVGSSDQSTT TISPLNSHFM ALTCRDTLRL IFQRLTVADL ARASCVCRVW NSVATENDLV ASAFTAPWRI KDLVGKPASG
101: AFWRDNGIWK FAISHRISRG DSVTSLAVKY SVQVMDIKRL NNMMSDHGIY SRDRLLIPIS NSEILVDTTC YIEVDKYAKR EVAVLYLEGG PKREQSASGM
201: NHLSTVSAHG KRKLIESLRR SMQVDDETAL YYLAIAEGNP RSALSEFSAD LTWERQAGLN

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.