Factsheet for Bra012213.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra007086.1-P
Bra013776.1-P
Bra014407.1-P
Bra014802.1-P
Bra015474.1-P
Bra017339.1-P
Bra017949.1-P
Bra020714.1-P
Bra024867.1-P
Bra024868.1-P
Bra025177.1-P
Bra026645.1-P
Bra028246.1-P
Bra029225.1-P
Bra030639.1-P
Bra034004.1-P
Bra034324.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra036353.1-P
Bra037508.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20140.1	Bra015474.1-P	AT1G06110.1	12169662
AT1G20140.1	Bra030639.1-P	AT1G06110.1	12169662
AT1G20140.1	Bra015474.1-P	AT1G06110.1	21798944
AT1G20140.1	Bra030639.1-P	AT1G06110.1	21798944
AT1G20140.1	Bra017949.1-P	AT1G21760.1	12169662
AT1G20140.1	Bra004092.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra004220.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra034004.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra003700.1-P	AT1G76920.1	12795696
AT1G20140.1	Bra024867.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra024868.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra026645.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra017339.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra025177.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra036353.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra014407.1-P	AT3G62230.1	12169662
AT1G20140.1	Bra036266.1-P	AT4G02440.1	16412087
AT1G20140.1	Bra036266.1-P	AT4G02440.1	21798944
AT1G20140.1	Bra000874.1-P	AT4G02570.1	16412087
AT1G20140.1	Bra036257.1-P	AT4G02570.1	16412087
AT1G20140.1	Bra013776.1-P	AT4G24210.1	15161962
AT1G20140.1	Bra028246.1-P	AT5G39450.1	21798944
AT1G20140.1	Bra020714.1-P	AT5G48170.1	15161962
AT1G20140.1	Bra036183.1-P	AT5G48170.1	15161962
AT1G20140.1	Bra037508.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra034324.1-P	AT2G04230.1	21798944
AT2G25700.1	Bra017339.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra025177.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra036353.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra007086.1-P	AT3G54650.1	19277118
AT2G25700.1	Bra014802.1-P	AT3G54650.1	19277118
AT2G25700.1	Bra000874.1-P	AT4G02570.1	16412087
AT2G25700.1	Bra036257.1-P	AT4G02570.1	16412087
AT2G25700.1	Bra029225.1-P	AT4G10400.1	21798944
AT2G25700.1	Bra013776.1-P	AT4G24210.1	15161962
AT2G25700.1	Bra020714.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra036183.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra037508.1-P	AT5G48170.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68971	Canola	cytosol	100.0	100.0
Bra012214.1-P	Field mustard	cytosol	57.24	64.93
Bra012216.1-P	Field mustard	cytosol	62.5	59.38
Bra025795.1-P	Field mustard	cytosol	59.21	55.9
AT1G20140.1	Thale cress	cytosol	59.21	55.21
AT2G25700.1	Thale cress	cytosol	59.21	55.21
Bra008231.1-P	Field mustard	cytosol	56.58	53.75
Bra003735.1-P	Field mustard	cytosol	55.26	52.5
Bra018756.1-P	Field mustard	cytosol	51.97	50.64
Bra015801.1-P	Field mustard	cytosol	53.29	50.31
Bra014159.1-P	Field mustard	cytosol	49.34	47.17
Bra018757.1-P	Field mustard	cytosol	48.68	46.25
Bra017397.1-P	Field mustard	cytosol	46.05	44.03
Bra014519.1-P	Field mustard	cytosol	44.74	42.77
Bra039504.1-P	Field mustard	cytosol	43.42	39.05

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra012213	EnsemblPlants:Bra012213.1	EnsemblPlants:Bra012213.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4D6V3
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	InterPro:SKP1	InterPro:SKP1-like
InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ
InterPro:Skp1_comp_dimer	UniParc:UPI0002541602	:	:	:	:

Description

AT1G20140 (E=8e-038) ASK4 | ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase

Coordinates

chrA07:-:9270162..9270711

Molecular Weight (calculated)

16802.9 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.276

Length

152 amino acids

Sequence
(BLAST)

001: MSKKITLKSS DGVSFQVDEA VALMSPRIKR MIEDDRTGNG ITIPNVNSAA LAKVIEYCKK HVEANADDTE LKAWDLDFAR ALEGLDKDAF FAVASAAHSL
101: NIGGLFDLTC KSVAEMVSGK TVDQIRDIFH IKNDYTDAEE AKMRKENAWA FE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.