Factsheet for Bra025177.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra035002.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Bra012213.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012214.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012216.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra025795.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra039504.1-P	AT2G03170.1	12795696
AT3G26000.1	Bra012213.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012214.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012216.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra025795.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra035002.1-P	AT3G44260.1	21798944
AT3G26000.1	Bra000874.1-P	AT4G02570.1	12795696
AT3G26000.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13604	Canola	cytosol	97.45	97.45
CDX83577	Canola	cytosol	91.88	92.31
Bra017339.1-P	Field mustard	cytosol	75.17	83.08
Bra036353.1-P	Field mustard	cytosol	64.73	70.99
AT3G26000.1	Thale cress	cytosol	64.5	61.37
KRH42623	Soybean	cytosol	50.81	48.56
KRH58731	Soybean	cytosol	50.35	46.87
VIT_01s0010g02380.t01	Wine grape	cytosol	51.97	46.67
PGSC0003DMT400041014	Potato	cytosol, plastid	46.64	41.88
Solyc04g024940.2.1	Tomato	cytosol, plastid	45.71	41.04
PGSC0003DMT400041013	Potato	cytosol, plastid	29.23	38.65
GSMUA_Achr3P02640_001	Banana	cytosol	32.25	34.49
Bra039085.1-P	Field mustard	cytosol	29.93	34.31
GSMUA_Achr2P20980_001	Banana	cytosol	36.43	33.12
EES12408	Sorghum	cytosol	32.71	30.85
Os04t0485800-01	Rice	cytosol, extracellular	32.25	30.68
Zm00001d003250_P001	Maize	cytosol	32.25	30.42
Zm00001d025717_P001	Maize	cytosol	32.25	28.72
Bra024868.1-P	Field mustard	cytosol	19.03	28.47
Bra024867.1-P	Field mustard	extracellular	15.08	28.14
Bra026645.1-P	Field mustard	cytosol	16.47	23.75
TraesCS2B01G363000.1	Wheat	nucleus	28.54	23.47
TraesCS2A01G320200.1	Wheat	nucleus	29.47	22.05
TraesCS2D01G343000.1	Wheat	nucleus	29.47	21.97
HORVU2Hr1G083980.2	Barley	nucleus	27.38	19.22

Protein Annotations

EnsemblPlants:Bra025177.1	EnsemblPlants:Bra025177.1-P	EnsemblPlantsGene:Bra025177	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000253F710
UniProt:M4E8S1	MapMan:35.1	:	:	:	:

Description

AT3G26000 (E=4e-132) | F-box family protein

Coordinates

chrA06:+:22936302..22937679

Molecular Weight (calculated)

47740.1 Da

IEP (calculated)

4.533

GRAVY (calculated)

-0.306

Length

431 amino acids

Sequence
(BLAST)

001: MALNFSQRNF SPHLSEEPMK IANGYLVEGV SERKDDVFSH PWCSSIAKGD SAASSVDILD VLPSDPFGMD INNTFTAITG WLEDLEVDYG RDERGGGDGT
101: HHQQLFARLS FIWNNAMRFQ EFPESNNVYD NGWGSLNGFG DGSCHGAFVS AGSVDEDGRN GGEVAESSGR CTDDGGGNAN VVHPAFGFCL YHLGVKDLLS
201: VSMVCKSLHT TVCDDSLLWR HIHISQPLNE KITDEALLQL TERAQGTMQC LRLVDCSRVT EDCLKQVLER NPQVVKLGVP GCIRITIDGV LSILRDLKSA
301: GKLQVKHLEI GGLFGVTKDH YDELFGLLNI ETNVEQSIQK PRFYHRGYSY VSCDDNEGID IEMCPKCENS RLVYDCPAED CKGKEECRAC SLCIQRCFQC
401: GRCINDSEYE ETFCLEFLCA DCSKPSSELP L

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.