Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39176 | Canola | cytosol | 61.15 | 70.3 |
| Bra017339.1-P | Field mustard | cytosol | 60.04 | 69.74 |
| CDY04188 | Canola | cytosol | 59.6 | 69.23 |
| Bra036353.1-P | Field mustard | cytosol | 57.62 | 66.41 |
| CDY40985 | Canola | cytosol | 57.62 | 66.41 |
| CDX99734 | Canola | cytosol | 57.84 | 65.83 |
| Bra025177.1-P | Field mustard | cytosol | 61.37 | 64.5 |
| CDY13604 | Canola | cytosol | 61.37 | 64.5 |
| CDX83577 | Canola | cytosol | 60.71 | 64.1 |
| KRH42623 | Soybean | cytosol | 45.03 | 45.23 |
| KRH58731 | Soybean | cytosol | 45.7 | 44.71 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 45.03 | 42.5 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 40.84 | 38.54 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 40.18 | 37.92 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 24.72 | 34.36 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 29.36 | 33.0 |
| AT3G27290.1 | Thale cress | cytosol | 27.37 | 32.46 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 32.01 | 32.01 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 32.67 | 31.22 |
| Zm00001d003250_P001 | Maize | cytosol | 30.46 | 30.2 |
| EES12408 | Sorghum | cytosol | 30.24 | 29.98 |
| Zm00001d025717_P001 | Maize | cytosol | 30.46 | 28.51 |
| AT2G01620.1 | Thale cress | cytosol | 16.78 | 26.03 |
| TraesCS2B01G363000.1 | Wheat | nucleus | 29.36 | 25.38 |
| TraesCS2D01G343000.1 | Wheat | nucleus | 30.68 | 24.05 |
| TraesCS2A01G320200.1 | Wheat | nucleus | 30.24 | 23.78 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 28.26 | 20.85 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:822197 | ProteinID:AEE77100.1 | ArrayExpress:AT3G26000 | EnsemblPlantsGene:AT3G26000 |
| RefSeq:AT3G26000 | TAIR:AT3G26000 | RefSeq:AT3G26000-TAIR-G | EnsemblPlants:AT3G26000.1 | TAIR:AT3G26000.1 | EMBL:AY058077 |
| EMBL:AY140009 | Unigene:At.23470 | ProteinID:BAB01063.1 | EMBL:BT015945 | InterPro:F-box-like_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_566787.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR44838 | PANTHER:PTHR44838:SF2 | UniProt:Q9LU91 | SUPFAM:SSF81383 | UniParc:UPI00000A5F0E |
| SEG:seg | : | : | : | : | : |
Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
Coordinates
chr3:-:9506778..9509302
Molecular Weight (calculated)
50545.9 Da
IEP (calculated)
5.589
GRAVY (calculated)
-0.324
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.