Factsheet for PGSC0003DMT400041014

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042215
PGSC0003DMT400063662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	PGSC0003DMT400042215	AT3G44260.1	21798944
AT3G26000.1	PGSC0003DMT400063662	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g024940.2.1	Tomato	cytosol, plastid	76.67	76.67
PGSC0003DMT400041013	Potato	cytosol, plastid	48.54	71.47
VIT_01s0010g02380.t01	Wine grape	cytosol	55.62	55.62
KRH42623	Soybean	cytosol	51.46	54.77
KRH58731	Soybean	cytosol	51.88	53.78
CDY04188	Canola	cytosol	39.58	48.72
Bra017339.1-P	Field mustard	cytosol	39.17	48.21
CDY39176	Canola	cytosol	39.38	47.97
CDX99734	Canola	cytosol	39.58	47.74
Bra025177.1-P	Field mustard	cytosol	41.88	46.64
CDY13604	Canola	cytosol	41.88	46.64
CDX83577	Canola	cytosol	41.04	45.92
Bra036353.1-P	Field mustard	cytosol	37.29	45.55
CDY40985	Canola	cytosol	37.08	45.29
AT3G26000.1	Thale cress	cytosol	38.54	40.84
GSMUA_Achr3P02640_001	Banana	cytosol	31.88	37.97
GSMUA_Achr2P20980_001	Banana	cytosol	36.46	36.92
PGSC0003DMT400017823	Potato	cytosol	30.0	35.38
PGSC0003DMT400052249	Potato	cytosol	34.17	33.4
Os04t0485800-01	Rice	cytosol, extracellular	30.42	32.23
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	18.96	29.93
EES12408	Sorghum	cytosol	28.33	29.76
Zm00001d003250_P001	Maize	cytosol	28.12	29.54
Zm00001d025717_P001	Maize	cytosol	27.5	27.27
TraesCS2B01G363000.1	Wheat	nucleus	27.08	24.81
TraesCS2A01G320200.1	Wheat	nucleus	28.33	23.61
TraesCS2D01G343000.1	Wheat	nucleus	28.33	23.53
HORVU2Hr1G083980.2	Barley	nucleus	27.08	21.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400041014	EnsemblPlantsGene:PGSC0003DMG401015867	EntrezGene:102594040	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	PFscan:PS50181	PGSC:PGSC0003DMG401015867	RefSeq:XP_006338882.1	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000295B8FB	UniProt:M1BAS3	MapMan:35.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401015867]

Coordinates

chr4:-:43893793..43897932

Molecular Weight (calculated)

53838.2 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.218

Length

480 amino acids

Sequence
(BLAST)

001: MALNFSHRPI FPAHISEDNL VSPMRIVNGC LVEGVPENNV ENFPWSWRVC REPHDGFEYG YGGKRRDKCD YSELVSEDII DLLPADPFGM DISTTITAIT
101: GWLEDLEVDY GGCRRNHAGP SNEDYGLFAG FDFIWNDSMR FQSFPINHVR SDDKLNRGDP VNWLIGERDM RDALAHVGLG SACNVGDTAG FNNVGSVSFL
201: PQTMETGSGA MSCSGEDEGA PHEALSFALG YLGVKDLLMV ESVCRSLRLT VKNDPLLWKS IHIENSLTEI SDDILLQLTS RAQGNLQCLS LLECTRITDD
301: GLRRVLDSNP HLTKLFVPAC TRLSIEGIVN MLKSFNCQRG KMGIKNLWIG GLYGVMHEHF EELEFLLGAD SQTRQNVYKP HFFSRRNIYR LVDDSRAIDV
401: QLCPICKKVR LVYDCPAEGC LVKDEATKEC RACSLCILRC SECGRCINNT EYVETFCLEL LCSDCSKQPL ECKDEQKCCL

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.