Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 6
- nucleus 2
- vacuole 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g007840.2.1 | Tomato | plastid | 91.23 | 91.23 |
| Bra020179.1-P | Field mustard | nucleus | 58.95 | 62.22 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 60.35 | 61.87 |
| CDY09125 | Canola | nucleus | 58.25 | 61.48 |
| CDY35673 | Canola | nucleus | 57.89 | 61.11 |
| KRH25294 | Soybean | nucleus | 59.3 | 60.79 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 27.02 | 60.63 |
| Bra035002.1-P | Field mustard | nucleus | 57.54 | 60.52 |
| CDY47299 | Canola | nucleus | 57.19 | 59.93 |
| AT5G22250.1 | Thale cress | cytosol | 57.89 | 59.35 |
| AT3G44260.1 | Thale cress | cytosol | 58.25 | 59.29 |
| CDY08688 | Canola | cytosol | 57.89 | 59.14 |
| CDX98586 | Canola | nucleus | 58.25 | 58.66 |
| CDX92371 | Canola | nucleus | 57.89 | 58.3 |
| Bra002400.1-P | Field mustard | nucleus | 57.19 | 58.01 |
| CDX88806 | Canola | cytosol | 57.54 | 57.54 |
| Bra006616.1-P | Field mustard | cytosol | 57.19 | 57.19 |
| KRH30376 | Soybean | nucleus | 56.84 | 57.04 |
| PGSC0003DMT400015091 | Potato | nucleus | 53.33 | 56.93 |
| PGSC0003DMT400050487 | Potato | nucleus | 56.14 | 56.14 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 41.75 | 55.87 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 47.02 | 54.92 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 55.79 | 51.46 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 31.23 | 51.45 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 56.14 | 51.28 |
| PGSC0003DMT400058833 | Potato | cytosol | 48.42 | 50.37 |
| PGSC0003DMT400073328 | Potato | nucleus | 47.37 | 49.45 |
| PGSC0003DMT400096830 | Potato | nucleus | 47.37 | 49.27 |
| PGSC0003DMT400036620 | Potato | nucleus | 47.37 | 49.27 |
| PGSC0003DMT400086131 | Potato | nucleus | 47.02 | 48.91 |
| PGSC0003DMT400089988 | Potato | nucleus | 45.26 | 47.25 |
| Zm00001d026657_P001 | Maize | cytosol | 45.61 | 43.48 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 38.95 | 43.19 |
| Zm00001d001774_P001 | Maize | nucleus | 44.91 | 43.1 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 38.95 | 42.86 |
| Os04t0684900-02 | Rice | nucleus | 47.72 | 41.34 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 45.61 | 40.12 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 45.61 | 40.0 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 45.26 | 39.45 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 44.91 | 39.38 |
| PGSC0003DMT400094861 | Potato | nucleus | 24.56 | 39.33 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 17.19 | 37.69 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 17.19 | 37.69 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 17.19 | 37.69 |
| EES11684 | Sorghum | nucleus | 43.51 | 37.01 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 17.54 | 36.5 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 32.98 | 36.43 |
| TraesCSU01G062600.1 | Wheat | cytosol | 32.63 | 36.19 |
| TraesCS6D01G318000.1 | Wheat | plastid | 32.63 | 32.86 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 19.65 | 32.18 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.47 | 31.7 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 35.09 | 31.65 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 30.53 | 31.64 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 29.12 | 31.44 |
| Os10t0128300-00 | Rice | plastid | 31.93 | 31.27 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 28.77 | 31.18 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 28.77 | 31.18 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 22.46 | 31.07 |
| KXG20050 | Sorghum | plastid | 29.12 | 30.86 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.82 | 30.04 |
| Os10t0124200-00 | Rice | cytosol | 30.88 | 29.83 |
| Zm00001d002885_P001 | Maize | plastid | 33.33 | 29.78 |
| EES10179 | Sorghum | plasma membrane, plastid | 29.12 | 29.54 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 29.47 | 29.17 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 29.82 | 28.91 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 29.82 | 28.91 |
| TraesCS4B01G071200.1 | Wheat | plastid | 30.53 | 28.9 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 29.47 | 28.67 |
| TraesCS4A01G243900.1 | Wheat | plastid | 30.18 | 28.57 |
| TraesCS4D01G069900.1 | Wheat | plastid | 30.18 | 28.48 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 29.12 | 28.42 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 29.12 | 28.42 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 29.82 | 28.33 |
| OQU76452 | Sorghum | plastid | 16.14 | 28.22 |
| TraesCS4B01G071100.1 | Wheat | plastid | 29.82 | 28.15 |
| TraesCS4B01G071000.1 | Wheat | plastid | 29.12 | 28.14 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 27.72 | 28.11 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.77 | 27.52 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.77 | 27.52 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 36.14 | 27.47 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.07 | 26.76 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.37 | 26.17 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 16.84 | 25.53 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.12 | 25.08 |
| OQU83919 | Sorghum | mitochondrion | 21.05 | 24.59 |
| OQU76454 | Sorghum | plastid | 17.19 | 24.14 |
| KXG22837 | Sorghum | mitochondrion | 29.12 | 23.99 |
| KXG38897 | Sorghum | plastid | 28.42 | 23.75 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 36.14 | 23.57 |
| Os07t0169800-00 | Rice | nucleus | 41.05 | 23.4 |
| Zm00001d029981_P001 | Maize | plastid | 30.18 | 23.18 |
| Zm00001d031508_P001 | Maize | cytosol | 31.23 | 22.59 |
| Zm00001d007893_P001 | Maize | nucleus | 34.74 | 19.84 |
| EER98038 | Sorghum | plastid | 36.84 | 18.23 |
| OQU76453 | Sorghum | plastid | 17.19 | 16.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042215 | EnsemblPlantsGene:PGSC0003DMG400016383 | EntrezGene:102587385 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF35 | PFAM:PF04857 | PGSC:PGSC0003DMG400016383 | RefSeq:XP_006348494.1 | SEG:seg | SUPFAM:SSF53098 |
| UniParc:UPI0002953E9B | UniProt:M1BCP0 | MapMan:16.8.2.1.2.2 | : | : | : |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016383]
Coordinates
chr1:-:3411973..3413078
Molecular Weight (calculated)
32273.0 Da
IEP (calculated)
6.094
GRAVY (calculated)
0.085
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSAIVIPP PPPFAAVKKP VFIRSVWANN LESEFSLIRS LVDRFPFVSM DTEFPGVIYR SDIRAKNPIE LYNNLKLNVD ALKLIQVGIT LTDGYGNLPD
101: FGCGFGFIWE FNFRDFDVLH DDHAPDSIEL LHDHGLDFKK TRARGADTTR FAELMLSSGL LCNDAVSYVT FHSAYDFGYL IKVLTGCKLP GVLTEFLKLL
201: KVFFGEKVYD VKYMMMFFPY LHGGLDRVAE TLMLNRLVGN SHQAGSDSLL TWHVFQKVKQ VYLEDNEART EKFGGILFGL EVLSP
101: FGCGFGFIWE FNFRDFDVLH DDHAPDSIEL LHDHGLDFKK TRARGADTTR FAELMLSSGL LCNDAVSYVT FHSAYDFGYL IKVLTGCKLP GVLTEFLKLL
201: KVFFGEKVYD VKYMMMFFPY LHGGLDRVAE TLMLNRLVGN SHQAGSDSLL TWHVFQKVKQ VYLEDNEART EKFGGILFGL EVLSP
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.