CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G075800.1	Wheat	nucleus	43.35	53.1
TraesCSU01G062600.1	Wheat	cytosol	42.41	52.14
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	57.91	48.8
GSMUA_Achr8P18010_001	Banana	mitochondrion	32.28	39.38
GSMUA_AchrUn_...	Banana	mitochondrion	31.96	39.3
CDX70991	Canola	cytosol, nucleus, plastid	15.51	38.58
KRH25294	Soybean	nucleus	33.86	38.49
VIT_06s0080g01090.t01	Wine grape	nucleus	33.54	38.13
Bra035002.1-P	Field mustard	nucleus	32.59	38.01
CDY47299	Canola	nucleus	32.28	37.5
CDY35673	Canola	nucleus	31.96	37.41
Bra020179.1-P	Field mustard	nucleus	31.96	37.41
KRH30376	Soybean	nucleus	33.54	37.32
TraesCS7A01G082100.1	Wheat	nucleus	51.58	37.3
CDY09125	Canola	nucleus	31.65	37.04
CDY08688	Canola	cytosol	32.59	36.92
AT3G44260.1	Thale cress	cytosol	32.59	36.79
AT5G22250.1	Thale cress	cytosol	32.28	36.69
EER96736	Sorghum	nucleus	32.28	36.56
CDX98586	Canola	nucleus	31.96	35.69
Bra002400.1-P	Field mustard	nucleus	31.65	35.59
Solyc01g007840.2.1	Tomato	plastid	31.96	35.44
EES05957	Sorghum	nucleus	32.28	35.42
CDX92371	Canola	nucleus	31.65	35.34
EES13910	Sorghum	nucleus	31.96	35.31
PGSC0003DMT400042215	Potato	plastid	31.65	35.09
CDX88806	Canola	cytosol	31.33	34.74
Bra006616.1-P	Field mustard	cytosol	31.33	34.74
KRH22647	Soybean	endoplasmic reticulum, vacuole	33.23	33.65
EES11684	Sorghum	nucleus	35.13	33.13
KRH26669	Soybean	endoplasmic reticulum, golgi	32.28	33.01
EES10179	Sorghum	plasma membrane, plastid	28.8	32.38
KXG20050	Sorghum	plastid	26.27	30.86
KXG22837	Sorghum	mitochondrion	31.65	28.9
OQU83918	Sorghum	cytosol, extracellular, nucleus	16.77	28.19
OQU83919	Sorghum	mitochondrion	21.2	27.46
OQU76452	Sorghum	plastid	13.92	26.99
EES09326	Sorghum	mitochondrion, nucleus	24.05	25.5
KXG38897	Sorghum	plastid	26.27	24.34
OQU76454	Sorghum	plastid	13.61	21.18
EER98038	Sorghum	plastid	35.13	19.27
OQU76453	Sorghum	plastid	15.19	15.95

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:8068420	UniProt:C5Z3R3	EnsemblPlants:EER87806	ProteinID:EER87806
ProteinID:EER87806.2	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928
GO:GO:0090503	InterPro:IPR036397	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF12	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	EnsemblPlantsGene:SORBI_3010G028900	SUPFAM:SSF53098	UniParc:UPI0009DC8775	RefSeq:XP_002436439.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:2341982..2342941

Molecular Weight (calculated)

33835.7 Da

IEP (calculated)

6.062

GRAVY (calculated)

0.149

Length

316 amino acids

Sequence
(BLAST)

001: MYSHDGGPVL IHPLQPPPPP PPPLCSFVHI VPQYTMVEYP PQPAPLVFTP GGGGGAFLEA ATKDVRPEVR DVWAGNFNDE LSNLTAVLPH YPWVCVDTEF
101: PGAVHDSDTP RYLRGPRESY ALVKKNVDDL KLLQVGIALS GPAGRFPVAW QFNLRGFDPA RHPYAPASLA LLRAQGMHFA TMNEFGIDPD AFAVGFHRSG
201: LACGQLTWTA FSGSYDFAYL AKVLTGGQPL PATLDGFLAL LFGPNVLDVK HLARCCAMRG GLEQVAAALG VERAAGHAHC AGSDSLLTTD VLLAMLNSFF
301: MNVDVLVHAG TIVDLA

Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)

001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF

Arabidopsis Description

CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.