Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG27287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KXG27287 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 65.16 | 84.57 |
| EES10179 | Sorghum | plasma membrane, plastid | 80.33 | 69.75 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 64.75 | 54.86 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 61.89 | 51.71 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 61.48 | 51.19 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 61.07 | 51.03 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 61.48 | 51.02 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 61.48 | 51.02 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 39.75 | 35.27 |
| KXG22837 | Sorghum | mitochondrion | 45.49 | 32.08 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 29.1 | 27.63 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 29.1 | 27.41 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 13.52 | 25.98 |
| Bra035002.1-P | Field mustard | nucleus | 28.28 | 25.46 |
| CDY47299 | Canola | nucleus | 27.87 | 25.0 |
| CDY09125 | Canola | nucleus | 27.05 | 24.44 |
| AT3G44260.1 | Thale cress | cytosol | 27.87 | 24.29 |
| CDY35673 | Canola | nucleus | 26.64 | 24.07 |
| Bra002400.1-P | Field mustard | nucleus | 27.46 | 23.84 |
| Bra020179.1-P | Field mustard | nucleus | 26.23 | 23.7 |
| CDX98586 | Canola | nucleus | 27.46 | 23.67 |
| CDY08688 | Canola | cytosol | 27.05 | 23.66 |
| KRH25294 | Soybean | nucleus | 26.64 | 23.38 |
| CDX92371 | Canola | nucleus | 27.05 | 23.32 |
| KRH30376 | Soybean | nucleus | 26.64 | 22.89 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 25.82 | 22.66 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.46 | 22.48 |
| AT5G22250.1 | Thale cress | cytosol | 25.41 | 22.3 |
| CDX88806 | Canola | cytosol | 25.82 | 22.11 |
| Bra006616.1-P | Field mustard | cytosol | 25.41 | 21.75 |
| EER96736 | Sorghum | nucleus | 24.59 | 21.51 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 27.46 | 21.2 |
| EES05957 | Sorghum | nucleus | 25.0 | 21.18 |
| PGSC0003DMT400042215 | Potato | plastid | 24.59 | 21.05 |
| Solyc01g007840.2.1 | Tomato | plastid | 24.59 | 21.05 |
| EES13910 | Sorghum | nucleus | 24.18 | 20.63 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 25.82 | 20.39 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 25.82 | 20.19 |
| KXG20050 | Sorghum | plastid | 22.13 | 20.07 |
| EES11684 | Sorghum | nucleus | 26.23 | 19.1 |
| KXG38897 | Sorghum | plastid | 24.18 | 17.3 |
| OQU76452 | Sorghum | plastid | 9.02 | 13.5 |
| OQU76454 | Sorghum | plastid | 10.66 | 12.81 |
| EER98038 | Sorghum | plastid | 27.05 | 11.46 |
| OQU76453 | Sorghum | plastid | 12.7 | 10.3 |
Protein Annotations
| EnsemblPlants:OQU83919 | EnsemblPlantsGene:SORBI_3005G199050 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 | ProteinID:KXG18681.1 |
| ProteinID:OQU83919 | ProteinID:OQU83919.1 | SUPFAM:SSF53098 | UniParc:UPI00076BBFAB | UniProt:A0A109ND37 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr5:-:68441026..68441865
Molecular Weight (calculated)
26560.9 Da
IEP (calculated)
8.023
GRAVY (calculated)
0.330
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MILARVMVGR LQFVSMGKEN ITTELQRIKE LLPRYRYVAI DTEYPSTVHE VPVGGAGRLT PVACYYALVK ANIDEVPILQ VGLTLCDEEG NLPVIVDGFN
101: FAHALVHNVP STDFMGKLAE VLAKVPQPLM WVVFGGAFDF AHMVKMLSVG QPLPKTHGEF MARARHLLHG LAFDAKYMGK HSGRAELCAG GLRTMAAILG
201: MPQLILVSPS LAGPKSHTAF CIFNVMRLVV HGGASYDGLI DGIY
101: FAHALVHNVP STDFMGKLAE VLAKVPQPLM WVVFGGAFDF AHMVKMLSVG QPLPKTHGEF MARARHLLHG LAFDAKYMGK HSGRAELCAG GLRTMAAILG
201: MPQLILVSPS LAGPKSHTAF CIFNVMRLVV HGGASYDGLI DGIY
001: MGEVWRWNKE VEMDSIRDCL KHFSSIAIDT EFPGCLKETP MDASEEIRYR DMKFNVDNTH LIQLGFTLFD RRGITKTWEI NLSDFNEHKC FKNDKSIAFL
101: KSNGLNLDKI GEEGIGIEEF FRDFSQILKE KDGKITWVNF QGSYDNAYLV KGLTGGKPLP ETKEEFHETV EQLLGKFVFD VKKIAESCSG LSSRFGLQRI
201: ADVLQMKRVG KAHHAGSDSE LTARVFTKLT FDLLNSRKQC VRRVDHQQYQ LEQQQLMMTR CYIPIPIPIP RPRSVMFAAH HPNPYFGGGY FGMPVQGRNY
301: VL
101: KSNGLNLDKI GEEGIGIEEF FRDFSQILKE KDGKITWVNF QGSYDNAYLV KGLTGGKPLP ETKEEFHETV EQLLGKFVFD VKKIAESCSG LSSRFGLQRI
201: ADVLQMKRVG KAHHAGSDSE LTARVFTKLT FDLLNSRKQC VRRVDHQQYQ LEQQQLMMTR CYIPIPIPIP RPRSVMFAAH HPNPYFGGGY FGMPVQGRNY
301: VL
Arabidopsis Description
CAF1-4Putative CCR4-associated factor 1 homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.