Factsheet for GSMUA_Achr8P18010_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	95.75	96.5
GSMUA_Achr6P19460_001	Banana	cytosol	34.36	51.45
GSMUA_Achr9P29700_001	Banana	cytosol	39.0	47.42
GSMUA_Achr6P19450_001	Banana	cytosol	44.02	46.72
CDX70991	Canola	cytosol, nucleus, plastid	22.01	44.88
Bra020179.1-P	Field mustard	nucleus	44.02	42.22
CDY09125	Canola	nucleus	44.02	42.22
CDY35673	Canola	nucleus	43.24	41.48
Bra035002.1-P	Field mustard	nucleus	43.24	41.33
KRH25294	Soybean	nucleus	44.02	41.01
CDY47299	Canola	nucleus	42.86	40.81
AT5G22250.1	Thale cress	cytosol	43.24	40.29
VIT_06s0080g01090.t01	Wine grape	nucleus	43.24	40.29
GSMUA_Achr2P05120_001	Banana	cytosol	39.77	40.08
GSMUA_Achr3P04600_001	Banana	nucleus	37.45	39.59
CDY08688	Canola	cytosol	42.47	39.43
KRH30376	Soybean	nucleus	42.86	39.08
PGSC0003DMT400042215	Potato	plastid	42.86	38.95
AT3G44260.1	Thale cress	cytosol	42.08	38.93
GSMUA_Achr9P13270_001	Banana	cytosol	40.93	38.55
CDX92371	Canola	nucleus	42.08	38.52
CDX98586	Canola	nucleus	42.08	38.52
GSMUA_Achr4P04150_001	Banana	cytosol	39.77	38.29
GSMUA_Achr4P04220_001	Banana	nucleus	39.77	38.29
GSMUA_Achr4P11450_001	Banana	cytosol	39.77	38.29
Solyc01g007840.2.1	Tomato	plastid	42.08	38.25
Bra002400.1-P	Field mustard	nucleus	41.31	38.08
TraesCSU01G062600.1	Wheat	cytosol	37.07	37.35
GSMUA_Achr9P22440_001	Banana	cytosol	36.29	37.3
Bra006616.1-P	Field mustard	cytosol	40.93	37.19
CDX88806	Canola	cytosol	40.93	37.19
TraesCS7D01G075800.1	Wheat	nucleus	36.29	36.43
KRH26669	Soybean	endoplasmic reticulum, golgi	43.24	36.25
KRH22647	Soybean	endoplasmic reticulum, vacuole	43.24	35.9
EER87806	Sorghum	cytosol, nucleus, plasma membrane	39.38	32.28
EES10179	Sorghum	plasma membrane, plastid	34.75	32.03
GSMUA_Achr1P10040_001	Banana	nucleus	33.98	31.54
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	35.52	31.29
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	35.52	31.29
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	35.14	31.16
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	35.14	31.06
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	34.75	30.82
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	33.2	29.86
Os10t0128300-00	Rice	plastid	33.2	29.55
EES09326	Sorghum	mitochondrion, nucleus	33.59	29.19
OQU83919	Sorghum	mitochondrion	27.41	29.1
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	42.08	29.07
Os10t0124200-00	Rice	cytosol	32.43	28.47
GSMUA_Achr4P30930_001	Banana	cytosol	21.24	28.21
Zm00001d002885_P001	Maize	plastid	34.36	27.9
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	13.9	27.69
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	13.9	27.69
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	13.9	27.69
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	29.34	27.64
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	14.29	27.01
TraesCS6D01G318000.1	Wheat	plastid	28.96	26.5
OQU83918	Sorghum	cytosol, extracellular, nucleus	18.92	26.06
KXG20050	Sorghum	plastid	26.25	25.28
TraesCS7B01G235700.1	Wheat	cytosol	25.48	25.1
TraesCS3D01G406100.1	Wheat	nucleus, plasma membrane, plastid	27.41	25.09
TraesCS4B01G071000.1	Wheat	plastid	28.19	24.75
TraesCS7D01G331400.1	Wheat	cytosol	25.1	24.71
TraesCS3D01G384800.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	16.6	24.71
TraesCS7A01G347500.1	Wheat	cytosol	25.1	24.53
TraesCS3B01G424000.1	Wheat	cytosol	19.3	24.27
TraesCS7A01G347600.1	Wheat	cytosol	24.71	24.24
TraesCS4D01G069900.1	Wheat	plastid	28.19	24.17
TraesCS7A01G082100.1	Wheat	nucleus	40.54	24.03
KXG22837	Sorghum	mitochondrion	32.05	23.99
TraesCS4B01G071200.1	Wheat	plastid	27.8	23.92
TraesCS4A01G243900.1	Wheat	plastid	27.8	23.92
TraesCS4B01G071100.1	Wheat	plastid	27.41	23.51
Zm00001d031508_P001	Maize	cytosol	35.52	23.35
TraesCS3B01G444600.1	Wheat	mitochondrion	26.64	23.08
GSMUA_Achr4P30910_001	Banana	nucleus	30.12	23.08
TraesCS3A01G411800.1	Wheat	mitochondrion, plastid	26.64	23.0
Os07t0169800-00	Rice	nucleus	44.02	22.8
TraesCS4A01G243700.1	Wheat	plastid	25.87	22.48
TraesCS4A01G243800.1	Wheat	plastid	25.87	22.48
TraesCS3B01G445400.1	Wheat	plastid	26.64	20.85
Zm00001d007893_P001	Maize	nucleus	39.77	20.64
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	22.39	20.64
KXG38897	Sorghum	plastid	25.87	19.65
Zm00001d029981_P001	Maize	plastid	26.64	18.6
OQU76454	Sorghum	plastid	13.51	17.24
EER98038	Sorghum	plastid	38.22	17.19
OQU76452	Sorghum	plastid	10.42	16.56
OQU76453	Sorghum	plastid	13.13	11.3

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18010_001	EnsemblPlants:GSMUA_Achr8T18010_001	EnsemblPlantsGene:GSMUA_Achr8G18010_001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF3	PFAM:PF04857	SEG:seg	SUPFAM:SSF53098	UniParc:UPI0002966057	UniProt:M0TRF4
MapMan:35.1	:	:	:	:	:

Description

Putative Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_Achr8G18010_001]

Coordinates

chr8:+:20729760..20730623

Molecular Weight (calculated)

28866.0 Da

IEP (calculated)

9.186

GRAVY (calculated)

-0.006

Length

259 amino acids

Sequence
(BLAST)

001: MSSQRGGGGG GRQYLVVRSV WAWNLEYEFS IIASLVDRFS YVAFDTEFPG FLYRTRRPHR LLPPSLRYAL LKANVDKMEL VQLGLTLFDA FGGLPDIGTG
101: GRVGGIDFDR LPLYGIDSGQ FAAHLYRSGL VAHCRFCRPH STRWIAFHSC YDFAYLIKVL GFGRPLPDTL EEFLGLVNLL FGETVDLKHI MRGCKGLSGG
201: LERVASTLGV PRQAGKSHQA GSDSLVTCQV YLKMKRRFFD DQDAKVACHR GIIYGLQAC

Best Arabidopsis Sequence Match ( AT1G15920.1 )
(BLAST)

001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN

Arabidopsis Description

CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.