Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P04150_001 | Banana | cytosol | 88.1 | 88.1 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 87.73 | 87.73 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 77.7 | 82.94 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 63.57 | 66.54 |
| KRH61689 | Soybean | nucleus | 65.06 | 64.1 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 58.36 | 64.08 |
| PGSC0003DMT400036620 | Potato | nucleus | 64.68 | 63.5 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 64.68 | 63.27 |
| Solyc03g117030.1.1 | Tomato | nucleus | 64.31 | 63.14 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 63.94 | 63.0 |
| KRH52356 | Soybean | nucleus | 63.2 | 62.27 |
| KRH47360 | Soybean | nucleus | 63.57 | 61.73 |
| CDY64914 | Canola | nucleus | 63.2 | 61.59 |
| Bra005614.1-P | Field mustard | nucleus | 63.2 | 61.59 |
| PGSC0003DMT400058833 | Potato | cytosol | 62.45 | 61.31 |
| Solyc11g045130.1.1 | Tomato | cytosol | 62.45 | 61.31 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 62.45 | 61.31 |
| CDY12234 | Canola | nucleus | 62.83 | 61.23 |
| PGSC0003DMT400073328 | Potato | nucleus | 62.08 | 61.17 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 60.97 | 60.74 |
| AT2G32070.1 | Thale cress | nucleus | 62.08 | 60.73 |
| CDY63973 | Canola | nucleus | 61.71 | 60.58 |
| CDY53227 | Canola | nucleus | 61.71 | 60.58 |
| Bra008439.1-P | Field mustard | nucleus | 61.71 | 60.58 |
| CDY39943 | Canola | cytosol | 61.71 | 60.36 |
| Bra035152.1-P | Field mustard | cytosol | 61.71 | 60.36 |
| CDX87343 | Canola | cytosol | 61.71 | 60.36 |
| KRH44539 | Soybean | cytosol | 62.45 | 59.79 |
| Solyc06g068410.2.1 | Tomato | nucleus | 55.39 | 59.13 |
| CDX70376 | Canola | nucleus | 59.11 | 57.61 |
| Bra006083.1-P | Field mustard | nucleus | 59.11 | 57.19 |
| CDX78405 | Canola | nucleus | 59.11 | 57.19 |
| AT1G80780.3 | Thale cress | cytosol | 60.22 | 56.64 |
| CDX97069 | Canola | nucleus | 58.74 | 56.43 |
| CDX69796 | Canola | nucleus | 57.99 | 56.12 |
| AT5G10960.1 | Thale cress | nucleus | 57.62 | 55.96 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 50.56 | 55.74 |
| Bra009001.1-P | Field mustard | nucleus | 57.99 | 55.71 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 43.49 | 54.93 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 56.88 | 54.84 |
| AT1G15920.2 | Thale cress | nucleus | 54.65 | 51.4 |
| CDY35049 | Canola | nucleus | 51.67 | 50.36 |
| KRH28796 | Soybean | nucleus | 18.22 | 50.0 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 31.6 | 49.13 |
| Bra026093.1-P | Field mustard | nucleus | 51.67 | 46.49 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 38.29 | 39.77 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.92 | 39.69 |
| CDY12236 | Canola | cytosol, extracellular | 51.67 | 33.74 |
| CDY33367 | Canola | cytosol, extracellular | 51.67 | 30.62 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 20.82 | 28.72 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 30.48 | 24.26 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P11450_001 | EnsemblPlants:GSMUA_Achr4T11450_001 | EnsemblPlantsGene:GSMUA_Achr4G11450_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF0 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI0002950EF6 | UniProt:M0SN10 | MapMan:35.1 |
Description
Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11450_001]
Coordinates
chr4:-:8247332..8248327
Molecular Weight (calculated)
30324.8 Da
IEP (calculated)
4.547
GRAVY (calculated)
-0.082
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTAEAAAV EIRDVWAENL EAEFAVIREV VDDFPFVAMD TEFPGVAIRP LGDFKTVADS NYHILRANVD LLHLIQLGLT FSDADGNFPA SPDSARPIVW
101: QFNFREFDVD GDISNPDSID LLQKSGIDFA RNREHGVDAN HFAELLMSSG VVLNDSVRWV TFHCAYDFGY LLKILTCRRL PDNREGFFEL ARTFFPVVYD
201: IKHLMRFSNS LHGGLNKVAE QLEVDRVGIC HQAGSDSLLT AQTFRKLTDK YFDGSIERYA GVMYGLDIE
101: QFNFREFDVD GDISNPDSID LLQKSGIDFA RNREHGVDAN HFAELLMSSG VVLNDSVRWV TFHCAYDFGY LLKILTCRRL PDNREGFFEL ARTFFPVVYD
201: IKHLMRFSNS LHGGLNKVAE QLEVDRVGIC HQAGSDSLLT AQTFRKLTDK YFDGSIERYA GVMYGLDIE
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.