Factsheet for VIT_04s0008g05850.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52356	Soybean	nucleus	87.18	87.18
KRH61689	Soybean	nucleus	87.18	87.18
VIT_09s0070g00060.t01	Wine grape	nucleus	82.05	81.75
PGSC0003DMT400058833	Potato	cytosol	81.32	81.02
GSMUA_Achr3P04600_001	Banana	nucleus	71.43	79.59
Solyc11g045130.1.1	Tomato	cytosol	79.49	79.2
GSMUA_Achr9P13270_001	Banana	cytosol	78.39	77.82
AT2G32070.1	Thale cress	nucleus	74.36	73.82
VIT_11s0037g00100.t01	Wine grape	nucleus	72.89	73.7
KRH28796	Soybean	nucleus	26.37	73.47
Bra008439.1-P	Field mustard	nucleus	73.26	72.99
CDY53227	Canola	nucleus	73.26	72.99
CDY63973	Canola	nucleus	72.89	72.63
Bra005614.1-P	Field mustard	nucleus	73.26	72.46
CDY64914	Canola	nucleus	73.26	72.46
AT5G10960.1	Thale cress	nucleus	72.89	71.84
CDX87343	Canola	cytosol	72.16	71.64
Bra035152.1-P	Field mustard	cytosol	72.16	71.64
CDY39943	Canola	cytosol	72.16	71.64
CDY12234	Canola	nucleus	72.16	71.38
CDX69796	Canola	nucleus	72.16	70.86
Bra009001.1-P	Field mustard	nucleus	71.79	70.0
CDX70376	Canola	nucleus	70.7	69.93
Bra006083.1-P	Field mustard	nucleus	70.7	69.42
CDX78405	Canola	nucleus	70.7	69.42
CDX97069	Canola	nucleus	71.06	69.29
AT1G80780.3	Thale cress	cytosol	71.43	68.18
TraesCS5B01G224400.1	Wheat	cytosol	69.23	67.74
TraesCS5A01G225900.1	Wheat	cytosol	69.23	67.74
TraesCS5D01G233200.1	Wheat	cytosol	69.23	67.74
EER96736	Sorghum	nucleus	68.5	67.03
Os09t0416800-01	Rice	cytosol	68.13	66.43
EES05957	Sorghum	nucleus	69.96	66.32
Zm00001d020486_P001	Maize	extracellular	67.03	65.59
Zm00001d052031_P001	Maize	cytosol	68.5	65.16
HORVU6Hr1G085410.1	Barley	cytosol	68.86	65.05
TraesCS6D01G341500.1	Wheat	cytosol	68.86	65.05
TraesCS6B01G391400.1	Wheat	cytosol	68.86	65.05
TraesCS6A01G358700.1	Wheat	cytosol	68.86	65.05
GSMUA_Achr4P11450_001	Banana	cytosol	63.0	63.94
GSMUA_Achr9P22440_001	Banana	cytosol	58.97	63.89
Os02t0796300-01	Rice	cytosol	68.86	63.73
GSMUA_Achr4P04150_001	Banana	cytosol	61.54	62.45
GSMUA_Achr4P04220_001	Banana	nucleus	61.17	62.08
TraesCS7B01G198900.1	Wheat	nucleus	65.2	60.54
TraesCS7D01G291400.1	Wheat	nucleus	64.84	60.2
TraesCS7A01G297000.1	Wheat	nucleus	64.84	60.2
HORVU7Hr1G067520.3	Barley	nucleus	64.84	59.0
VIT_06s0080g01090.t01	Wine grape	nucleus	59.34	58.27
Os08t0440300-03	Rice	cytosol	60.44	57.29
AT1G15920.2	Thale cress	nucleus	59.71	56.99
GSMUA_Achr2P05120_001	Banana	cytosol	53.48	56.81
EES13910	Sorghum	nucleus	57.88	55.24
CDY35049	Canola	nucleus	54.21	53.62
Zm00001d018378_P001	Maize	nucleus	15.38	53.16
Zm00001d050433_P001	Maize	nucleus	53.48	52.14
GSMUA_Achr1P10040_001	Banana	nucleus	52.01	50.9
Bra026093.1-P	Field mustard	nucleus	54.21	49.5
VIT_08s0007g02570.t01	Wine grape	nucleus	50.92	48.6
Zm00001d032158_P002	Maize	plastid	57.51	39.45
CDY12236	Canola	cytosol, extracellular	55.68	36.89
CDY33367	Canola	cytosol, extracellular	55.68	33.48

Protein Annotations

EntrezGene:100255985	wikigene:100255985	Gene3D:3.30.420.10	MapMan:35.1	EMBL:AM486046	ProteinID:CAN79806
ProteinID:CAN79806.1	ProteinID:CCB46825	ProteinID:CCB46825.1	UniProt:F6H3J0	EMBL:FN595231	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397
EntrezGene:LOC100255985	wikigene:LOC100255985	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF31	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	TIGR:TC57013	TIGR:TC66603	UniParc:UPI000198313C
ArrayExpress:VIT_04s0008g05850	EnsemblPlantsGene:VIT_04s0008g05850	EnsemblPlants:VIT_04s0008g05850.t01	unigene:Vvi.9500	RefSeq:XP_003631762	RefSeq:XP_003631762.1
RefSeq:XP_010648684.1	RefSeq:XP_010648686.1	:	:	:	:

Description

No Description!

Coordinates

chr4:-:5459793..5461432

Molecular Weight (calculated)

30981.1 Da

IEP (calculated)

4.609

GRAVY (calculated)

-0.132

Length

273 amino acids

Sequence
(BLAST)

001: MSISPKTESV LIREVWNENL ESEFALIREI VDKYPYIAMD TEFPGVVLRP MGTFKNINDY NYQTLKDNVD MLKLIQLGLT FSDANGNLPT CGTDKLCIWQ
101: FNFREFDVTE DVFASDSIQM LQECGMDFKK NNEKGIDVNQ FGELLMSSGI VLNDNVSWVT FHSGYDFGYL LKLLTRRSLP GTQAGFFDLI NMYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLRDSF FNGSTEKYAG VLYGLGVETG QTN

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.