Factsheet for Os08t0440300-03

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G297000.1	Wheat	nucleus	74.31	72.79
TraesCS7B01G198900.1	Wheat	nucleus	74.31	72.79
TraesCS7D01G291400.1	Wheat	nucleus	73.96	72.45
HORVU7Hr1G067520.3	Barley	nucleus	74.65	71.67
Os09t0416800-01	Rice	cytosol	65.62	67.5
GSMUA_Achr9P13270_001	Banana	cytosol	61.11	64.0
EES13910	Sorghum	nucleus	63.54	63.99
GSMUA_Achr3P04600_001	Banana	nucleus	52.78	62.04
KRH61689	Soybean	nucleus	58.68	61.9
KRH52356	Soybean	nucleus	58.33	61.54
VIT_09s0070g00060.t01	Wine grape	nucleus	57.64	60.58
VIT_04s0008g05850.t01	Wine grape	nucleus	57.29	60.44
Zm00001d050433_P001	Maize	nucleus	58.68	60.36
CDY64914	Canola	nucleus	57.64	60.14
Bra005614.1-P	Field mustard	nucleus	57.64	60.14
AT2G32070.1	Thale cress	nucleus	57.29	60.0
KRH47360	Soybean	nucleus	57.64	59.93
CDY12234	Canola	nucleus	56.94	59.42
VIT_11s0037g00100.t01	Wine grape	nucleus	55.56	59.26
PGSC0003DMT400036620	Potato	nucleus	56.25	59.12
PGSC0003DMT400058833	Potato	cytosol	55.9	58.76
Solyc03g117030.1.1	Tomato	nucleus	55.9	58.76
Os02t0796300-01	Rice	cytosol	60.07	58.64
PGSC0003DMT400073328	Potato	nucleus	55.21	58.24
KRH44539	Soybean	cytosol	56.6	58.01
CDX87343	Canola	cytosol	55.21	57.82
Bra035152.1-P	Field mustard	cytosol	55.21	57.82
Bra008439.1-P	Field mustard	nucleus	54.86	57.66
CDY53227	Canola	nucleus	54.86	57.66
Solyc11g045130.1.1	Tomato	cytosol	54.86	57.66
CDY39943	Canola	cytosol	54.86	57.45
CDY63973	Canola	nucleus	54.51	57.3
Solyc06g068410.2.1	Tomato	nucleus	48.96	55.95
AT5G10960.1	Thale cress	nucleus	53.47	55.6
CDX69796	Canola	nucleus	53.47	55.4
AT1G80780.3	Thale cress	cytosol	54.86	55.24
CDX70376	Canola	nucleus	52.78	55.07
Bra009001.1-P	Field mustard	nucleus	53.47	55.0
Bra006083.1-P	Field mustard	nucleus	52.78	54.68
CDX78405	Canola	nucleus	52.78	54.68
CDX97069	Canola	nucleus	52.78	54.29
AT1G15920.2	Thale cress	nucleus	53.12	53.5
CDY35049	Canola	nucleus	49.65	51.81
KRH28796	Soybean	nucleus	16.67	48.98
Bra026093.1-P	Field mustard	nucleus	49.65	47.83
Zm00001d032158_P002	Maize	plastid	62.85	45.48
Os04t0684900-02	Rice	nucleus	39.93	34.95
CDY33367	Canola	cytosol, extracellular	51.04	32.38
CDY12236	Canola	cytosol, extracellular	45.83	32.04
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	29.17	30.55
Os10t0128300-00	Rice	plastid	29.51	29.21
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	36.11	27.73
Os10t0124200-00	Rice	cytosol	28.12	27.46
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	26.74	27.4
Os07t0169800-00	Rice	nucleus	37.85	21.8

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:4345683	EMBL:AK103781	EMBL:AK105990	EMBL:AK109485
ProteinID:BAD09890.1	ProteinID:BAD09904.1	ProteinID:BAT05621.1	ProteinID:EAZ42877.1	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148
GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	EnsemblPlantsGene:Os08g0440300
EnsemblPlants:Os08t0440300-03	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF0	UniProt:Q6Z9G7	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI000023AF66	RefSeq:XP_015651075.1	:

Description

CCR4-associated factor 1A, carbon cataboliterepressor 4-associated factor 1A, CCR4-associated factor 1-12Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os08t0440300-01);Ribonuclease CAF1 family protein. (Os08t0440300-03);Ribonuclease CAF1 family protein. (Os08t0440300-04)

Coordinates

chr8:+:21418859..21420117

Molecular Weight (calculated)

32086.3 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.155

Length

288 amino acids

Sequence
(BLAST)

001: MAAAAAACVE SPDEGVEIRE VWAGNLEAEI AAIRDEVDRY PYVAMDTEFP GIVCRPVGNF RTTDEFNYAN LEANVNMLKL IQLGLTLSDE GGDLPRRGTG
101: GRRCIWQFNF RGFDPRTDPS NADSIQMLRT CGIDFDRFAA EGADPIRFAE LLMSSGVVLN ADVQWITFHS GYDFGYLLRL LTGRNLPDNM PAFFDLIRIY
201: FPVLYDIKHL MRFCSNLHGG LSRLGELLDV KRVGTCHQAG SDSLLTLGCY NKIKEVYFKG STEKHAGVLY GLVIEDGVNR PPPTQPNE

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.