Factsheet for Os09t0416800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 24805883
nucleus: 24805883

gfp PMID: 24805883 doi

WL Chou, LF Huang, JC Fang, CH Yeh, CY Hong, SJ Wu, CA Lu

Department of Life Sciences, National Central University, Jhongli City, Taoyuan County, 320, Taiwan, ROC.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96736	Sorghum	nucleus	89.64	89.96
TraesCS5A01G225900.1	Wheat	cytosol	89.64	89.96
TraesCS5D01G233200.1	Wheat	cytosol	89.64	89.96
TraesCS5B01G224400.1	Wheat	cytosol	89.29	89.61
Zm00001d020486_P001	Maize	extracellular	88.21	88.53
GSMUA_Achr9P13270_001	Banana	cytosol	72.86	74.18
GSMUA_Achr3P04600_001	Banana	nucleus	64.29	73.47
KRH61689	Soybean	nucleus	68.93	70.7
PGSC0003DMT400036620	Potato	nucleus	68.57	70.07
KRH47360	Soybean	nucleus	69.29	70.04
KRH52356	Soybean	nucleus	68.21	69.96
Solyc03g117030.1.1	Tomato	nucleus	68.21	69.71
VIT_09s0070g00060.t01	Wine grape	nucleus	67.5	68.98
PGSC0003DMT400058833	Potato	cytosol	67.5	68.98
Bra035152.1-P	Field mustard	cytosol	67.5	68.73
CDX87343	Canola	cytosol	67.5	68.73
Bra008439.1-P	Field mustard	nucleus	67.14	68.61
CDY53227	Canola	nucleus	67.14	68.61
Solyc11g045130.1.1	Tomato	cytosol	67.14	68.61
CDY39943	Canola	cytosol	67.14	68.36
AT2G32070.1	Thale cress	nucleus	67.14	68.36
CDY63973	Canola	nucleus	66.79	68.25
VIT_11s0037g00100.t01	Wine grape	nucleus	65.71	68.15
PGSC0003DMT400073328	Potato	nucleus	66.43	68.13
VIT_04s0008g05850.t01	Wine grape	nucleus	66.43	68.13
CDY64914	Canola	nucleus	67.14	68.12
Bra005614.1-P	Field mustard	nucleus	67.14	68.12
CDY12234	Canola	nucleus	66.79	67.75
KRH44539	Soybean	cytosol	67.86	67.62
Os02t0796300-01	Rice	cytosol	71.07	67.46
Os08t0440300-03	Rice	cytosol	67.5	65.62
AT1G80780.3	Thale cress	cytosol	66.43	65.03
CDX70376	Canola	nucleus	63.21	64.13
Bra006083.1-P	Field mustard	nucleus	63.57	64.03
CDX78405	Canola	nucleus	63.57	64.03
AT5G10960.1	Thale cress	nucleus	63.21	63.9
Solyc06g068410.2.1	Tomato	nucleus	57.5	63.89
CDX97069	Canola	nucleus	62.5	62.5
KRH28796	Soybean	nucleus	21.79	62.24
CDX69796	Canola	nucleus	61.43	61.87
Bra009001.1-P	Field mustard	nucleus	61.79	61.79
AT1G15920.2	Thale cress	nucleus	56.79	55.59
CDY35049	Canola	nucleus	54.29	55.07
Bra026093.1-P	Field mustard	nucleus	54.29	50.84
Os04t0684900-02	Rice	nucleus	44.29	37.69
CDY12236	Canola	cytosol, extracellular	53.21	36.16
CDY33367	Canola	cytosol, extracellular	55.0	33.92
Os10t0128300-00	Rice	plastid	33.21	31.96
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	30.71	30.61
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	29.64	30.18
Os10t0124200-00	Rice	cytosol	31.79	30.17
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	37.14	27.73
Os07t0169800-00	Rice	nucleus	39.29	22.0

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:4347066	EMBL:AK065377	EMBL:AK099984	ProteinID:BAD28924.1
ProteinID:BAD29264.1	ProteinID:BAF25095.1	ProteinID:BAT08093.1	ProteinID:EAZ44741.1	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148
GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	EnsemblPlantsGene:Os09g0416800
EnsemblPlants:Os09t0416800-01	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF0	UniProt:Q6EQ06	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI00003CE849	RefSeq:XP_015611819.1	SEG:seg

Description

CCR4-associated factor 1G, carbon cataboliterepressor 4-associated factor 1G, CCR4-associated factor 1-13Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os09t0416800-01)

Coordinates

chr9:+:14929157..14930268

Molecular Weight (calculated)

31016.9 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.043

Length

280 amino acids

Sequence
(BLAST)

001: MATPAAEKPD GVEIREVWED NLEAEFAVIR EIVDDFPYVA MDTEFPGVVC RPLGTFKSNA DFNYATLKAN VDMLKLIQLG LTFSNEHGGL PSLGPEGRPC
101: VWQFNFRGFD PRTDVAAADS IDLLRRSGID FTRHSADGAD ARRFAELLMS SGVVMNSEVR WVTFHSGYDF GYLLKLLTGT YLPDTITGFF DLIRIYFPVV
201: YDIKHLMRFC NSLHGGLNKL AELLDVERVG ICHQAGSDSL LTALSFKKLK EAYFNGLTEK YAGVLYGLGT EGGETSSAAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.