CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44539	Soybean	cytosol	97.47	96.09
KRH61689	Soybean	nucleus	84.12	85.35
KRH52356	Soybean	nucleus	83.39	84.62
GSMUA_Achr3P04600_001	Banana	nucleus	72.56	82.04
GSMUA_Achr9P13270_001	Banana	cytosol	80.51	81.09
AT2G32070.1	Thale cress	nucleus	79.06	79.64
Bra008439.1-P	Field mustard	nucleus	78.34	79.2
CDY53227	Canola	nucleus	78.34	79.2
Bra005614.1-P	Field mustard	nucleus	78.7	78.99
CDY64914	Canola	nucleus	78.7	78.99
CDY12234	Canola	nucleus	78.7	78.99
CDY63973	Canola	nucleus	77.98	78.83
Bra035152.1-P	Field mustard	cytosol	77.98	78.55
CDX87343	Canola	cytosol	77.98	78.55
CDY39943	Canola	cytosol	77.62	78.18
AT1G80780.3	Thale cress	cytosol	77.62	75.17
AT5G10960.1	Thale cress	nucleus	70.76	70.76
KRH28796	Soybean	nucleus	24.91	70.41
CDX69796	Canola	nucleus	70.4	70.14
CDX70376	Canola	nucleus	69.68	69.93
CDX78405	Canola	nucleus	70.04	69.78
Bra006083.1-P	Field mustard	nucleus	70.04	69.78
Bra009001.1-P	Field mustard	nucleus	70.4	69.64
EES05957	Sorghum	nucleus	72.2	69.44
CDX97069	Canola	nucleus	70.04	69.29
Os09t0416800-01	Rice	cytosol	70.04	69.29
TraesCS5D01G233200.1	Wheat	cytosol	69.68	69.18
TraesCS5B01G224400.1	Wheat	cytosol	69.68	69.18
TraesCS5A01G225900.1	Wheat	cytosol	69.68	69.18
EER96736	Sorghum	nucleus	69.31	68.82
Zm00001d052031_P001	Maize	cytosol	71.12	68.64
HORVU6Hr1G085410.1	Barley	cytosol	71.12	68.17
TraesCS6D01G341500.1	Wheat	cytosol	71.12	68.17
TraesCS6B01G391400.1	Wheat	cytosol	71.12	68.17
TraesCS6A01G358700.1	Wheat	cytosol	71.12	68.17
Zm00001d020486_P001	Maize	extracellular	67.51	67.03
Os02t0796300-01	Rice	cytosol	71.12	66.78
GSMUA_Achr9P22440_001	Banana	cytosol	58.12	63.89
GSMUA_Achr4P11450_001	Banana	cytosol	61.73	63.57
GSMUA_Achr4P04150_001	Banana	cytosol	61.37	63.2
GSMUA_Achr4P04220_001	Banana	nucleus	61.01	62.83
AT1G15920.2	Thale cress	nucleus	63.18	61.19
TraesCS7B01G198900.1	Wheat	nucleus	64.26	60.54
TraesCS7A01G297000.1	Wheat	nucleus	63.9	60.2
TraesCS7D01G291400.1	Wheat	nucleus	63.54	59.86
HORVU7Hr1G067520.3	Barley	nucleus	63.9	59.0
Os08t0440300-03	Rice	cytosol	59.93	57.64
CDY35049	Canola	nucleus	56.68	56.88
EES13910	Sorghum	nucleus	58.48	56.64
GSMUA_Achr2P05120_001	Banana	cytosol	52.35	56.42
Zm00001d050433_P001	Maize	nucleus	55.23	54.64
KRH39619	Soybean	cytosol, nucleus, plastid	27.8	53.47
KRG96235	Soybean	nucleus	51.99	52.55
Bra026093.1-P	Field mustard	nucleus	56.68	52.51
KRH67979	Soybean	nucleus	51.62	52.19
Zm00001d018378_P001	Maize	nucleus	14.8	51.9
KRH25294	Soybean	nucleus	51.26	51.08
KRH30376	Soybean	nucleus	52.35	51.06
KRH26669	Soybean	endoplasmic reticulum, golgi	54.15	48.54
GSMUA_Achr1P10040_001	Banana	nucleus	48.01	47.67
KRH22647	Soybean	endoplasmic reticulum, vacuole	52.35	46.47
Zm00001d032158_P002	Maize	plastid	57.4	39.95
CDY12236	Canola	cytosol, extracellular	57.4	38.59
CDY33367	Canola	cytosol, extracellular	57.76	35.24

Protein Annotations

EntrezGene:100789409	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02004146	EnsemblPlantsGene:GLYMA_07G024000	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	UniProt:I1KGU2
InterPro:IPR036397	EnsemblPlants:KRH47360	ProteinID:KRH47360	ProteinID:KRH47360.1	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI0002338824

Description

hypothetical protein

Coordinates

chr7:+:1855493..1857869

Molecular Weight (calculated)

31530.4 Da

IEP (calculated)

4.522

GRAVY (calculated)

-0.187

Length

277 amino acids

Sequence
(BLAST)

001: MPLVLAKSDS IQIREVWNDN LEEEFALIRE IVDDYPYIAM DTEFPGIVLR PVGNFKNSYD YHYQTLKDNV DMLKLIQLGL TFSDEHGNLP TCGDESGTCC
101: IWQFNFREFN VNEDVFANDS IELLRQSGID FKRNNENGID AHRFGELLMS SGIVLNDNVH WVTFHSGYDF GYLLKLLTCQ DLPDTQVGFF NLINMYFPTV
201: YDIKHLMKFC NSLHGGLNKL AELLEVERVG ICHQAGSDSL LTSCTFRKLK DNFFSGSLEK YAGVLYGLGV ENGQGSH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.