Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KRH52586 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | KRH61926 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25294 | Soybean | nucleus | 90.49 | 92.45 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 73.94 | 75.54 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 33.45 | 74.8 |
| Bra035002.1-P | Field mustard | nucleus | 67.61 | 70.85 |
| CDY47299 | Canola | nucleus | 67.25 | 70.22 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 77.11 | 70.19 |
| AT5G22250.1 | Thale cress | cytosol | 68.66 | 70.14 |
| Bra020179.1-P | Field mustard | nucleus | 66.55 | 70.0 |
| CDY35673 | Canola | nucleus | 66.2 | 69.63 |
| CDY09125 | Canola | nucleus | 66.2 | 69.63 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 75.7 | 69.58 |
| CDY08688 | Canola | cytosol | 68.31 | 69.53 |
| AT3G44260.1 | Thale cress | cytosol | 68.31 | 69.29 |
| KRH39619 | Soybean | cytosol, nucleus, plastid | 34.51 | 68.06 |
| CDX92371 | Canola | nucleus | 67.25 | 67.49 |
| CDX98586 | Canola | nucleus | 66.9 | 67.14 |
| Bra002400.1-P | Field mustard | nucleus | 65.85 | 66.55 |
| KRH67979 | Soybean | nucleus | 63.73 | 66.06 |
| KRG96235 | Soybean | nucleus | 63.38 | 65.69 |
| Bra006616.1-P | Field mustard | cytosol | 65.49 | 65.26 |
| CDX88806 | Canola | cytosol | 65.49 | 65.26 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 46.13 | 61.5 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 51.41 | 59.84 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 34.86 | 57.23 |
| PGSC0003DMT400042215 | Potato | plastid | 57.04 | 56.84 |
| Solyc01g007840.2.1 | Tomato | plastid | 56.34 | 56.14 |
| KRH61689 | Soybean | nucleus | 51.76 | 53.85 |
| KRH52356 | Soybean | nucleus | 51.06 | 53.11 |
| KRH47360 | Soybean | nucleus | 51.06 | 52.35 |
| KRH44539 | Soybean | cytosol | 50.35 | 50.89 |
| KRH28796 | Soybean | nucleus | 16.2 | 46.94 |
| Zm00001d001774_P001 | Maize | nucleus | 47.89 | 45.79 |
| Zm00001d026657_P001 | Maize | cytosol | 47.54 | 45.15 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 39.08 | 42.86 |
| Os04t0684900-02 | Rice | nucleus | 49.65 | 42.86 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.68 | 41.63 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 47.89 | 41.59 |
| EES11684 | Sorghum | nucleus | 48.24 | 40.9 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 46.48 | 40.74 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 46.48 | 40.62 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 46.13 | 40.31 |
| TraesCSU01G062600.1 | Wheat | cytosol | 34.86 | 38.52 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 33.8 | 37.21 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 33.45 | 34.55 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 15.49 | 33.85 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 15.49 | 33.85 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 15.49 | 33.85 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 16.2 | 33.58 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 37.32 | 33.54 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 20.42 | 33.33 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 23.24 | 32.04 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.58 | 31.7 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 29.23 | 31.44 |
| Os10t0124200-00 | Rice | cytosol | 32.39 | 31.19 |
| EES10179 | Sorghum | plasma membrane, plastid | 30.28 | 30.61 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 28.17 | 30.42 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 27.46 | 29.66 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 39.08 | 29.6 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 30.63 | 29.59 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 30.63 | 29.59 |
| Os10t0128300-00 | Rice | plastid | 30.28 | 29.55 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 29.93 | 29.51 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 30.28 | 29.45 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 30.28 | 29.45 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.23 | 29.33 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.23 | 29.33 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 29.93 | 29.01 |
| KXG20050 | Sorghum | plastid | 27.46 | 29.0 |
| Zm00001d002885_P001 | Maize | plastid | 32.39 | 28.84 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 30.28 | 28.67 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.93 | 28.24 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.58 | 27.91 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.87 | 27.8 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 27.46 | 27.76 |
| TraesCS4D01G069900.1 | Wheat | plastid | 29.23 | 27.48 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.52 | 27.18 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.52 | 27.18 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.87 | 27.15 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.52 | 27.09 |
| OQU83919 | Sorghum | mitochondrion | 22.89 | 26.64 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.82 | 26.51 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.58 | 25.38 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 38.38 | 24.94 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 15.85 | 23.94 |
| OQU76452 | Sorghum | plastid | 13.73 | 23.93 |
| Os07t0169800-00 | Rice | nucleus | 40.85 | 23.2 |
| KXG22837 | Sorghum | mitochondrion | 28.17 | 23.12 |
| Zm00001d031508_P001 | Maize | cytosol | 30.63 | 22.08 |
| Zm00001d029981_P001 | Maize | plastid | 28.52 | 21.83 |
| KXG38897 | Sorghum | plastid | 26.06 | 21.7 |
| OQU76454 | Sorghum | plastid | 14.79 | 20.69 |
| Zm00001d007893_P001 | Maize | nucleus | 36.27 | 20.64 |
| EER98038 | Sorghum | plastid | 39.08 | 19.27 |
| OQU76453 | Sorghum | plastid | 15.49 | 14.62 |
Protein Annotations
| EntrezGene:100500357 | MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EMBL:ACUP02007004 | EnsemblPlantsGene:GLYMA_11G180500 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | UniProt:I1LKN4 |
| InterPro:IPR036397 | EnsemblPlants:KRH30376 | ProteinID:KRH30376 | ProteinID:KRH30376.1 | PFAM:PF04857 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF35 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI000233D845 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:24617430..24620230
Molecular Weight (calculated)
32672.8 Da
IEP (calculated)
6.584
GRAVY (calculated)
-0.274
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVFSENPNP DPVVIRQVWA SNLESEFQLI RELIDHYPFI SMDTEFPGVV FRPHLDPTKP YNHRNNNRNR HSDHYRLLKS NVDALNLIQV GLTLTDAAGN
101: LPDLAGNRSI WEFNFRDFDV ARDAYALDSI DLLRRQGIDF ARNATDGVES TRFAELMMSS GLVCNDSVSW VTFHSAYDFG YLVKILTRRN LPTRLEEFLK
201: TVKVFFGDNV YDVKHMMRFC DTLYGGLDRV ARSLNVERAV GKCHQAGSDS LLTWHAFQKI VDIYFVKDEH RKHAGVLYGL EVFC
101: LPDLAGNRSI WEFNFRDFDV ARDAYALDSI DLLRRQGIDF ARNATDGVES TRFAELMMSS GLVCNDSVSW VTFHSAYDFG YLVKILTRRN LPTRLEEFLK
201: TVKVFFGDNV YDVKHMMRFC DTLYGGLDRV ARSLNVERAV GKCHQAGSDS LLTWHAFQKI VDIYFVKDEH RKHAGVLYGL EVFC
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.