Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G243700.1 | Wheat | plastid | 97.32 | 97.32 |
| TraesCS4A01G243900.1 | Wheat | plastid | 91.95 | 91.03 |
| TraesCS4B01G071200.1 | Wheat | plastid | 89.6 | 88.7 |
| TraesCS4B01G071000.1 | Wheat | plastid | 86.58 | 87.46 |
| TraesCS4D01G069900.1 | Wheat | plastid | 87.58 | 86.42 |
| TraesCS4B01G071100.1 | Wheat | plastid | 87.25 | 86.09 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 59.73 | 59.33 |
| KXG20050 | Sorghum | plastid | 40.27 | 44.61 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 38.93 | 43.77 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 37.92 | 42.8 |
| KXG38897 | Sorghum | plastid | 48.32 | 42.23 |
| OQU76452 | Sorghum | plastid | 21.81 | 39.88 |
| Zm00001d029981_P001 | Maize | plastid | 47.65 | 38.27 |
| OQU76454 | Sorghum | plastid | 21.48 | 31.53 |
| Bra020179.1-P | Field mustard | nucleus | 27.52 | 30.37 |
| CDY09125 | Canola | nucleus | 27.18 | 30.0 |
| CDY35673 | Canola | nucleus | 26.85 | 29.63 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.42 | 29.13 |
| Solyc01g007840.2.1 | Tomato | plastid | 27.85 | 29.12 |
| Bra035002.1-P | Field mustard | nucleus | 26.17 | 28.78 |
| PGSC0003DMT400042215 | Potato | plastid | 27.52 | 28.77 |
| CDY47299 | Canola | nucleus | 26.17 | 28.68 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 26.85 | 28.67 |
| KRH30376 | Soybean | nucleus | 27.18 | 28.52 |
| Bra006616.1-P | Field mustard | cytosol | 27.18 | 28.42 |
| CDX88806 | Canola | cytosol | 27.18 | 28.42 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 26.51 | 28.42 |
| KRH25294 | Soybean | nucleus | 26.17 | 28.06 |
| AT5G22250.1 | Thale cress | cytosol | 26.17 | 28.06 |
| CDX98586 | Canola | nucleus | 26.51 | 27.92 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 27.52 | 27.89 |
| AT3G44260.1 | Thale cress | cytosol | 26.17 | 27.86 |
| CDY08688 | Canola | cytosol | 25.5 | 27.24 |
| CDX92371 | Canola | nucleus | 25.84 | 27.21 |
| Bra002400.1-P | Field mustard | nucleus | 25.5 | 27.05 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 29.19 | 26.85 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 25.84 | 26.64 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 22.48 | 25.87 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 22.15 | 25.68 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 26.51 | 25.32 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 26.17 | 25.24 |
| OQU76453 | Sorghum | plastid | 24.83 | 24.58 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 28.52 | 19.45 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 19.13 | 8.96 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G243800.1 | EnsemblPlantsGene:TraesCS4A01G243800 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:554558280..554559514
Molecular Weight (calculated)
32734.3 Da
IEP (calculated)
9.479
GRAVY (calculated)
-0.160
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPPTGMFPP PPPPPFHHTF PMQPPPYFYH APMSPVWASW AVPVRSVWAS NFKHESANLC HVARRAQYVA VDVHYPGAVH HPSQDHNALT VEERYALVKA
101: NVDGLKPLQV GIALYDSDGG YLAAWEFNLR DFRPHADPHD ENSLAYLAGR GLNVGALRDH GVSADMLSKK LFESGLVGAR RGRSRSWITY AGAYHVAYLL
201: KIVTGGAALP RDVAGFNAAV RRYLGDQVYD VARMAADCPA MPRALEHIVT HLGLHPPLGS PHLAAAAGVH ALQVFMRLKY VELGGDVRKY RGLLKGLH
101: NVDGLKPLQV GIALYDSDGG YLAAWEFNLR DFRPHADPHD ENSLAYLAGR GLNVGALRDH GVSADMLSKK LFESGLVGAR RGRSRSWITY AGAYHVAYLL
201: KIVTGGAALP RDVAGFNAAV RRYLGDQVYD VARMAADCPA MPRALEHIVT HLGLHPPLGS PHLAAAAGVH ALQVFMRLKY VELGGDVRKY RGLLKGLH
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.