Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G225900.1 | Wheat | cytosol | 12.11 | 27.6 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 12.42 | 26.87 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 11.64 | 25.61 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 12.26 | 24.07 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 8.18 | 19.62 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 9.12 | 19.33 |
| TraesCS4A01G243900.1 | Wheat | plastid | 9.12 | 19.27 |
| TraesCS4A01G243800.1 | Wheat | plastid | 8.96 | 19.13 |
| TraesCS4A01G243700.1 | Wheat | plastid | 8.81 | 18.79 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 7.7 | 18.56 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 12.11 | 17.62 |
| TraesCS3D01G126800.1 | Wheat | plastid | 18.55 | 17.35 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 19.18 | 12.94 |
| CDX83963 | Canola | cytosol | 0.0 | 0.0 |
| CDX96828 | Canola | cytosol | 0.0 | 0.0 |
| CDY70980 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G447900.1 | EnsemblPlantsGene:TraesCS3A01G447900 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF32 | SEG:seg |
| SUPFAM:SSF53098 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:687990115..687992025
Molecular Weight (calculated)
69803.7 Da
IEP (calculated)
5.627
GRAVY (calculated)
-0.256
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPAGLAAGD LGEPVGRDGD GGPQGEAIVE GGAVRRGTGV RASGAGEMTN RNAPGHDAKT SDTEEMSCVI NAGKTSKAEA PRHDAKAGDT EDMSGAINAR
101: KTSKAEAPRH DAKAGDTKEM SGAINARKTS KAEAPRHDAE KELPRASEAG KTSNAVAPGH YIKALDTEKV LPRGSDAGGT SKAIALGQDF KVATAEEMPR
201: AATDVCSVWR ENWEESLQSM SGFLDLPGTM TIAIDTEYAT KCLLRLEQPQ NGDEWYSQLQ ATAGTADLVQ VGVAVTFADA DAENIEPIRV WEFNLFFDSK
301: SNQYNPSTLL FLEKKCRHDL EKHRQYGIMP TDFFQWVYEL HSIFARRSVT VVTYQGDADI ALLIYQGAPM PARRLDFLLD ISNTFPALVD TRVLAMVWAP
401: DFCGKLDDLA DMLGLSRSGT RHHAGSDAAL TLRCYFAMRR LLGDQKVLRG VLCGLFQSEP SVCTARIAWD PSISILHVWG KNFDEVAGQF GRLIENNFTV
501: VTVKVLFDPP LRKGPFNRDP QFCYSNMQLR LDEKIRCTIA MVFATGHGQV ANSASFVFHI CFSGGEYIEP VQFARMLDEQ GVLCNPYLTW VTFLGAESVA
601: FIYDMVYHSF QFWIPTMFSH YKVSRTGMFP VPEAAH
101: KTSKAEAPRH DAKAGDTKEM SGAINARKTS KAEAPRHDAE KELPRASEAG KTSNAVAPGH YIKALDTEKV LPRGSDAGGT SKAIALGQDF KVATAEEMPR
201: AATDVCSVWR ENWEESLQSM SGFLDLPGTM TIAIDTEYAT KCLLRLEQPQ NGDEWYSQLQ ATAGTADLVQ VGVAVTFADA DAENIEPIRV WEFNLFFDSK
301: SNQYNPSTLL FLEKKCRHDL EKHRQYGIMP TDFFQWVYEL HSIFARRSVT VVTYQGDADI ALLIYQGAPM PARRLDFLLD ISNTFPALVD TRVLAMVWAP
401: DFCGKLDDLA DMLGLSRSGT RHHAGSDAAL TLRCYFAMRR LLGDQKVLRG VLCGLFQSEP SVCTARIAWD PSISILHVWG KNFDEVAGQF GRLIENNFTV
501: VTVKVLFDPP LRKGPFNRDP QFCYSNMQLR LDEKIRCTIA MVFATGHGQV ANSASFVFHI CFSGGEYIEP VQFARMLDEQ GVLCNPYLTW VTFLGAESVA
601: FIYDMVYHSF QFWIPTMFSH YKVSRTGMFP VPEAAH
001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE
Arabidopsis Description
CAF1-1Probable CCR4-associated factor 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.