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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • nucleus 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G243800.1 Wheat plastid 97.32 97.32
TraesCS4A01G243900.1 Wheat plastid 91.28 90.37
TraesCS4B01G071200.1 Wheat plastid 87.92 87.04
TraesCS4B01G071000.1 Wheat plastid 85.91 86.78
TraesCS4D01G069900.1 Wheat plastid 85.91 84.77
TraesCS4B01G071100.1 Wheat plastid 85.91 84.77
TraesCS3A01G411800.1 Wheat mitochondrion, plastid 58.72 58.33
KXG20050 Sorghum plastid 39.93 44.24
TraesCS7A01G347500.1 Wheat cytosol 38.59 43.4
TraesCS7A01G347600.1 Wheat cytosol 37.58 42.42
KXG38897 Sorghum plastid 48.32 42.23
OQU76452 Sorghum plastid 21.48 39.26
Zm00001d029981_P001 Maize plastid 47.65 38.27
OQU76454 Sorghum plastid 21.81 32.02
Bra020179.1-P Field mustard nucleus 28.19 31.11
CDY09125 Canola nucleus 27.85 30.74
CDY35673 Canola nucleus 27.52 30.37
Bra035002.1-P Field mustard nucleus 26.85 29.52
CDY47299 Canola nucleus 26.85 29.41
VIT_06s0080g01090.t01 Wine grape nucleus 26.85 28.78
Bra006616.1-P Field mustard cytosol 27.52 28.77
CDX88806 Canola cytosol 27.52 28.77
Solyc01g007840.2.1 Tomato plastid 27.52 28.77
PGSC0003DMT400042215 Potato plastid 27.52 28.77
CDX98586 Canola nucleus 27.18 28.62
AT3G44260.1 Thale cress cytosol 26.85 28.57
KRH30376 Soybean nucleus 27.18 28.52
AT5G22250.1 Thale cress cytosol 26.51 28.42
KRH25294 Soybean nucleus 26.51 28.42
CDX70991 Canola cytosol, nucleus, plastid 12.08 28.35
TraesCS5A01G225900.1 Wheat cytosol 26.51 28.32
CDY08688 Canola cytosol 26.17 27.96
CDX92371 Canola nucleus 26.51 27.92
Bra002400.1-P Field mustard nucleus 26.17 27.76
TraesCS7A01G297000.1 Wheat nucleus 26.85 27.21
TraesCS2A01G583000.1 Wheat nucleus 29.19 26.85
TraesCS6A01G358700.1 Wheat cytosol 25.17 25.95
GSMUA_Achr8P18010_001 Banana mitochondrion 22.48 25.87
GSMUA_AchrUn_... Banana mitochondrion 22.15 25.68
KRH22647 Soybean endoplasmic reticulum, vacuole 26.85 25.64
KRH26669 Soybean endoplasmic reticulum, golgi 26.17 25.24
OQU76453 Sorghum plastid 24.83 24.58
TraesCS7A01G082100.1 Wheat nucleus 28.86 19.68
TraesCS3A01G447900.1 Wheat cytoskeleton, cytosol, nucleus 18.79 8.81
Protein Annotations
EnsemblPlants:TraesCS4A01G243700.1EnsemblPlantsGene:TraesCS4A01G243700Gene3D:3.30.420.10GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR036397InterPro:RNaseH-like_sfInterPro:RNaseH_sfInterPro:RNase_CAF1PANTHER:PTHR10797PANTHER:PTHR10797:SF7
PFAM:PF04857SEG:segSUPFAM:SSF53098MapMan:35.1::
Description
No Description!
Coordinates
chr4A:+:554542730..554543626
Molecular Weight (calculated)
32928.6 Da
IEP (calculated)
9.432
GRAVY (calculated)
-0.171
Length
298 amino acids
Sequence
(BLAST)
001: MNPPTGMFPP PPPPPFHHTF PMQPPPYFYH APMSPVWASW AVPVRSVWAS NFKYESENLL HVARRAQYVA VDVHYPGVVH HPGKDHNALT VEERYALVKA
101: NVDGLKPLQV GIALYDSDGG YLAAWEFNLR DFRPHADPHD ENSLAYLAGR GLNVSALRDH GVSADMLSKK LFESGLVGAR RGRSRSWITY AGAYHVAYLL
201: KIVTGGAALP RDVAGFNAAV RRYLGDQVYD VARMAADCPA MPRALEHIVT HLGLHPPLES PHLAAAAGVH ALQVFMRLKY VELGGDVRKY RGLLKGLH
Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.