Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G075800.1 | Wheat | nucleus | 50.57 | 85.66 |
| TraesCSU01G062600.1 | Wheat | cytosol | 50.34 | 85.6 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 37.3 | 51.58 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 40.5 | 47.2 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 11.9 | 40.94 |
| Bra020179.1-P | Field mustard | nucleus | 25.17 | 40.74 |
| Bra035002.1-P | Field mustard | nucleus | 25.17 | 40.59 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 24.03 | 40.54 |
| CDY47299 | Canola | nucleus | 25.17 | 40.44 |
| CDY35673 | Canola | nucleus | 24.94 | 40.37 |
| KRH25294 | Soybean | nucleus | 25.63 | 40.29 |
| CDY09125 | Canola | nucleus | 24.71 | 40.0 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 25.17 | 39.57 |
| CDY08688 | Canola | cytosol | 25.17 | 39.43 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.11 | 39.3 |
| AT3G44260.1 | Thale cress | cytosol | 25.17 | 39.29 |
| AT5G22250.1 | Thale cress | cytosol | 24.71 | 38.85 |
| KRH30376 | Soybean | nucleus | 24.94 | 38.38 |
| Bra002400.1-P | Field mustard | nucleus | 24.49 | 38.08 |
| CDX88806 | Canola | cytosol | 24.71 | 37.89 |
| CDX98586 | Canola | nucleus | 24.49 | 37.81 |
| Bra006616.1-P | Field mustard | cytosol | 24.49 | 37.54 |
| CDX92371 | Canola | nucleus | 24.26 | 37.46 |
| Solyc01g007840.2.1 | Tomato | plastid | 24.03 | 36.84 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 24.71 | 36.73 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 23.34 | 36.56 |
| PGSC0003DMT400042215 | Potato | plastid | 23.57 | 36.14 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 23.34 | 35.29 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 23.8 | 33.66 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 23.34 | 32.69 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 22.43 | 30.25 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 17.62 | 29.17 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 17.62 | 29.06 |
| TraesCS4A01G243900.1 | Wheat | plastid | 19.91 | 28.9 |
| TraesCS4A01G243700.1 | Wheat | plastid | 19.68 | 28.86 |
| TraesCS4A01G243800.1 | Wheat | plastid | 19.45 | 28.52 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 18.99 | 27.67 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 17.62 | 12.11 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G082100.1 | EnsemblPlantsGene:TraesCS7A01G082100 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF12 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7A:+:47341820..47343133
Molecular Weight (calculated)
48695.4 Da
IEP (calculated)
9.267
GRAVY (calculated)
-0.422
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSGDGGPV LLHPPSALHH HAVYPGPAHH HHPGMVWNPF QPTYDQQHLL PMPMPMPGPM MVHMQPPPVD RFAFAFDAHA NAHRRRRRRG GRGSRTPSPP
101: SSPVGQPAFA RHVHCAPQPP AEVEVPAVWE WNQADETTPL LPPPHPVVTI DTEFPGTLHS SATPFYPRGP YEVEVRDVWK WNLVREMEAI TALLPTHPVV
201: TIDTEFPGVV HDSATPRAKR SPKEAYALVR SNVDHLKHLL QLGLTLSGPG GSHPVVWQFN FRGFDEKRDP HAPESIAMLK AHGMDFARLN QDGIDPGDFT
301: DEFMRSGLNH RRPRRGRSAP EPLTWVAFSG SYDFAYLAKM LFRRGNRRLP QKLEDFRRRV ELLFGPWVLD AKYIAKTCSR LGGLELVAGD LGVQRRAGVA
401: HNAGSDSLLT ADLMHAIVLP LDYDVRKIHG GKIDGLV
101: SSPVGQPAFA RHVHCAPQPP AEVEVPAVWE WNQADETTPL LPPPHPVVTI DTEFPGTLHS SATPFYPRGP YEVEVRDVWK WNLVREMEAI TALLPTHPVV
201: TIDTEFPGVV HDSATPRAKR SPKEAYALVR SNVDHLKHLL QLGLTLSGPG GSHPVVWQFN FRGFDEKRDP HAPESIAMLK AHGMDFARLN QDGIDPGDFT
301: DEFMRSGLNH RRPRRGRSAP EPLTWVAFSG SYDFAYLAKM LFRRGNRRLP QKLEDFRRRV ELLFGPWVLD AKYIAKTCSR LGGLELVAGD LGVQRRAGVA
401: HNAGSDSLLT ADLMHAIVLP LDYDVRKIHG GKIDGLV
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.