Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G062600.1 | Wheat | cytosol | 89.92 | 90.27 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 85.66 | 50.57 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 53.1 | 43.35 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 20.16 | 40.94 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 57.75 | 39.73 |
| Bra035002.1-P | Field mustard | nucleus | 38.37 | 36.53 |
| CDY47299 | Canola | nucleus | 38.37 | 36.4 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 39.15 | 36.33 |
| Bra020179.1-P | Field mustard | nucleus | 37.98 | 36.3 |
| CDY35673 | Canola | nucleus | 37.98 | 36.3 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 36.43 | 36.29 |
| CDY09125 | Canola | nucleus | 37.6 | 35.93 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 35.66 | 35.8 |
| KRH25294 | Soybean | nucleus | 38.37 | 35.61 |
| AT5G22250.1 | Thale cress | cytosol | 37.98 | 35.25 |
| AT3G44260.1 | Thale cress | cytosol | 37.98 | 35.0 |
| CDY08688 | Canola | cytosol | 37.6 | 34.77 |
| Bra002400.1-P | Field mustard | nucleus | 37.6 | 34.52 |
| CDX98586 | Canola | nucleus | 37.6 | 34.28 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 36.82 | 34.05 |
| CDX88806 | Canola | cytosol | 37.6 | 34.04 |
| CDX92371 | Canola | nucleus | 37.21 | 33.92 |
| KRH30376 | Soybean | nucleus | 37.21 | 33.8 |
| Solyc01g007840.2.1 | Tomato | plastid | 37.21 | 33.68 |
| Bra006616.1-P | Field mustard | cytosol | 37.21 | 33.68 |
| PGSC0003DMT400042215 | Potato | plastid | 36.43 | 32.98 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 36.82 | 32.87 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 36.43 | 31.97 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 36.43 | 30.42 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 36.05 | 29.81 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 36.05 | 28.44 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 18.22 | 27.01 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 27.52 | 27.0 |
| TraesCS6D01G318000.1 | Wheat | plastid | 28.29 | 25.8 |
| TraesCS4D01G069900.1 | Wheat | plastid | 27.91 | 23.84 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 25.58 | 23.32 |
| TraesCS3D01G126800.1 | Wheat | plastid | 24.81 | 9.41 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G075800.1 | EnsemblPlantsGene:TraesCS7D01G075800 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF12 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7D:+:45004211..45004987
Molecular Weight (calculated)
28564.3 Da
IEP (calculated)
9.585
GRAVY (calculated)
-0.342
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAITALLPT HPVVTIDTEF PGAVHDSATP RAKRSPKEAY ALVRRNVDHL KHLLQLGVTL SGPGGSHPVV WQFNFRGFDE RLDPHAPESI AMLKAHGMDF
101: ARLREDGIDP GDFADEFMRS GLNHRRPRRG RGAPEPLTWV AFSGSYDFAY LARMLFRQGS KGLPQKLEDF GRRVEKFFGP WVLDAKYIAK TCRIEDGGLE
201: KVANTLGVQR RAGVAHNAGS DSLLTADVML AIVLQLEGPP NYDYKVREKH AGKIDGLV
101: ARLREDGIDP GDFADEFMRS GLNHRRPRRG RGAPEPLTWV AFSGSYDFAY LARMLFRQGS KGLPQKLEDF GRRVEKFFGP WVLDAKYIAK TCRIEDGGLE
201: KVANTLGVQR RAGVAHNAGS DSLLTADVML AIVLQLEGPP NYDYKVREKH AGKIDGLV
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.