Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09125 | Canola | nucleus | 97.78 | 97.78 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 42.22 | 89.76 |
| CDX92371 | Canola | nucleus | 88.52 | 84.45 |
| CDX98586 | Canola | nucleus | 88.52 | 84.45 |
| CDX88806 | Canola | cytosol | 87.41 | 82.81 |
| CDY47299 | Canola | nucleus | 82.22 | 81.62 |
| CDY08688 | Canola | cytosol | 81.48 | 78.85 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 72.96 | 70.86 |
| KRH30376 | Soybean | nucleus | 69.63 | 66.2 |
| KRH25294 | Soybean | nucleus | 67.78 | 65.83 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 48.52 | 61.5 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 69.63 | 60.84 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 54.44 | 60.25 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 68.89 | 59.62 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 37.78 | 58.96 |
| Solyc01g007840.2.1 | Tomato | plastid | 61.48 | 58.25 |
| PGSC0003DMT400042215 | Potato | plastid | 61.11 | 57.89 |
| CDY64914 | Canola | nucleus | 52.59 | 51.45 |
| CDY12234 | Canola | nucleus | 52.22 | 51.09 |
| CDX70376 | Canola | nucleus | 51.48 | 50.36 |
| CDX69796 | Canola | nucleus | 51.85 | 50.36 |
| CDX78405 | Canola | nucleus | 51.48 | 50.0 |
| CDX97069 | Canola | nucleus | 51.85 | 50.0 |
| CDY53227 | Canola | nucleus | 50.74 | 50.0 |
| CDY63973 | Canola | nucleus | 50.74 | 50.0 |
| CDX87343 | Canola | cytosol | 50.74 | 49.82 |
| CDY35049 | Canola | nucleus | 50.74 | 49.64 |
| CDY39943 | Canola | cytosol | 50.37 | 49.45 |
| Zm00001d026657_P001 | Maize | cytosol | 50.37 | 45.48 |
| Zm00001d001774_P001 | Maize | nucleus | 50.0 | 45.45 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 41.48 | 43.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 40.37 | 42.41 |
| Os04t0684900-02 | Rice | nucleus | 51.48 | 42.25 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 49.63 | 40.98 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 48.89 | 40.62 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 48.52 | 40.43 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 48.52 | 40.31 |
| EES11684 | Sorghum | nucleus | 49.63 | 40.0 |
| TraesCSU01G062600.1 | Wheat | cytosol | 37.04 | 38.91 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 36.3 | 37.98 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 17.41 | 36.15 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 17.41 | 36.15 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 17.41 | 36.15 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 18.15 | 35.77 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 35.56 | 34.91 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 22.22 | 34.48 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 32.22 | 32.83 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 31.85 | 32.58 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 37.41 | 31.96 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 30.74 | 31.56 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.07 | 31.55 |
| Os10t0124200-00 | Rice | cytosol | 34.44 | 31.53 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 30.37 | 31.18 |
| EES10179 | Sorghum | plasma membrane, plastid | 32.22 | 30.96 |
| KXG20050 | Sorghum | plastid | 30.74 | 30.86 |
| CDY33367 | Canola | cytosol, extracellular | 50.37 | 29.96 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 32.59 | 29.93 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 32.59 | 29.93 |
| Os10t0128300-00 | Rice | plastid | 32.22 | 29.9 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 41.48 | 29.87 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.85 | 29.86 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 32.22 | 29.79 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 31.11 | 29.68 |
| TraesCS6D01G318000.1 | Wheat | plastid | 31.11 | 29.68 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 31.85 | 29.45 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 32.59 | 29.33 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 31.48 | 29.01 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 30.0 | 28.83 |
| CDY12236 | Canola | cytosol, extracellular | 43.33 | 28.4 |
| Zm00001d002885_P001 | Maize | plastid | 32.59 | 27.59 |
| TraesCS4A01G243700.1 | Wheat | plastid | 30.37 | 27.52 |
| TraesCS4D01G069900.1 | Wheat | plastid | 30.74 | 27.48 |
| TraesCS4B01G071000.1 | Wheat | plastid | 30.0 | 27.46 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 30.37 | 27.42 |
| TraesCS4A01G243900.1 | Wheat | plastid | 30.37 | 27.24 |
| TraesCS4B01G071200.1 | Wheat | plastid | 30.37 | 27.24 |
| EES09326 | Sorghum | mitochondrion, nucleus | 30.0 | 27.18 |
| TraesCS4A01G243800.1 | Wheat | plastid | 29.63 | 26.85 |
| OQU83919 | Sorghum | mitochondrion | 24.07 | 26.64 |
| CDX73277 | Canola | cytosol | 31.85 | 26.63 |
| TraesCS4B01G071100.1 | Wheat | plastid | 29.63 | 26.49 |
| CDY26919 | Canola | cytosol | 31.48 | 26.4 |
| TraesCS3B01G445400.1 | Wheat | plastid | 31.11 | 25.38 |
| OQU76452 | Sorghum | plastid | 15.19 | 25.15 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 40.37 | 24.94 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 33.7 | 24.8 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 33.7 | 24.8 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 34.07 | 24.4 |
| KXG38897 | Sorghum | plastid | 30.37 | 24.05 |
| Os07t0169800-00 | Rice | nucleus | 44.44 | 24.0 |
| KXG22837 | Sorghum | mitochondrion | 30.0 | 23.41 |
| Zm00001d029981_P001 | Maize | plastid | 31.85 | 23.18 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 15.93 | 22.87 |
| OQU76454 | Sorghum | plastid | 16.67 | 22.17 |
| Zm00001d031508_P001 | Maize | cytosol | 31.48 | 21.57 |
| CDY12276 | Canola | cytosol | 27.41 | 20.9 |
| CDY22569 | Canola | cytosol | 33.7 | 20.13 |
| Zm00001d007893_P001 | Maize | nucleus | 37.04 | 20.04 |
| EER98038 | Sorghum | plastid | 41.11 | 19.27 |
| OQU76453 | Sorghum | plastid | 17.41 | 15.61 |
| CDX83963 | Canola | cytosol | 0.0 | 0.0 |
| CDX96828 | Canola | cytosol | 0.0 | 0.0 |
| CDY70980 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY35673 | EnsemblPlantsGene:GSBRNA2T00059074001 | Gene3D:3.30.420.10 | GO:A0A078HFU0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:CDY35673 | ProteinID:CDY35673.1 | SEG:seg | SUPFAM:SSF53098 |
| UniParc:UPI0003E6B104 | UniProt:A0A078HFU0 | MapMan:16.8.2.1.2.2 | : | : | : |
Description
BnaC02g09390DBnaC02g09390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFU0]
Coordinates
chrLK032358:-:26529..27445
Molecular Weight (calculated)
30976.0 Da
IEP (calculated)
5.428
GRAVY (calculated)
-0.183
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MINPSVVVRE VWADNLESEF ELISGIVEDY PFISMDTEFP GVIYKADLRR INPGYLYKLL KSNVDALSLI QVGLTLSDAD GNLPHLGGGV GGSRFIWEFN
101: FRDFDVDRDP HAPDSIELLR RHGIDFERNR REGVESGRFA ELMVSSGLIC NESVSWVTFH SAYDFGYLVK ILTRRELPGS LGEFLRLFRA FFGERVYDVK
201: HMMRFCERRL FGGLDRVARS LEVNREVGKC HQAGSDSLLT WQAFRRMRDL YFVEDGPEKH AGVLYGLEVF
101: FRDFDVDRDP HAPDSIELLR RHGIDFERNR REGVESGRFA ELMVSSGLIC NESVSWVTFH SAYDFGYLVK ILTRRELPGS LGEFLRLFRA FFGERVYDVK
201: HMMRFCERRL FGGLDRVARS LEVNREVGKC HQAGSDSLLT WQAFRRMRDL YFVEDGPEKH AGVLYGLEVF
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.