CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26919	Canola	cytosol	98.14	98.45
AT1G61470.1	Thale cress	nucleus	45.2	52.52
AT1G27890.1	Thale cress	cytosol	45.82	49.01
AT1G27820.1	Thale cress	cytosol	46.44	48.39
CDY12276	Canola	cytosol	44.58	40.68
CDY22569	Canola	cytosol	53.25	38.05
CDX70376	Canola	nucleus	27.55	32.25
CDY35673	Canola	nucleus	26.63	31.85
CDY09125	Canola	nucleus	26.63	31.85
GSMUA_Achr4P30930_001	Banana	cytosol	19.2	31.79
CDX78405	Canola	nucleus	27.24	31.65
CDY35049	Canola	nucleus	26.93	31.52
CDX70991	Canola	cytosol, nucleus, plastid	12.38	31.5
CDX97069	Canola	nucleus	27.24	31.43
CDX69796	Canola	nucleus	26.93	31.3
CDX88806	Canola	cytosol	27.55	31.23
CDY64914	Canola	nucleus	26.63	31.16
CDY12234	Canola	nucleus	26.63	31.16
CDY47299	Canola	nucleus	26.01	30.88
CDX98586	Canola	nucleus	26.93	30.74
CDX87343	Canola	cytosol	26.01	30.55
CDX92371	Canola	nucleus	26.63	30.39
CDY53227	Canola	nucleus	25.7	30.29
CDY63973	Canola	nucleus	25.7	30.29
CDY39943	Canola	cytosol	25.7	30.18
CDY08688	Canola	cytosol	26.01	30.11
CDY06214	Canola	cytosol, mitochondrion, nucleus	31.27	27.52
CDY09974	Canola	cytosol, mitochondrion, nucleus	30.96	27.25
CDY09972	Canola	cytosol, mitochondrion, nucleus	31.27	26.79
GSMUA_Achr4P30910_001	Banana	nucleus	27.55	26.33
CDY12236	Canola	cytosol, extracellular	29.1	22.82
CDY33367	Canola	cytosol, extracellular	28.48	20.26
CDX83963	Canola	cytosol	0.0	0.0
CDY70980	Canola	cytosol	0.0	0.0
CDX96828	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73277	EnsemblPlantsGene:GSBRNA2T00106335001	Gene3D:3.30.420.10	GO:A0A078C8U4	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	ncoils:Coil
PANTHER:PTHR10797	PANTHER:PTHR10797:SF16	PFAM:PF04857	ProteinID:CDX73277	ProteinID:CDX73277.1	SUPFAM:SSF53098
UniParc:UPI0004EC7E43	MapMan:35.1	:	:	:	:

Description

BnaC05g28290D

Coordinates

chrLK031798:-:596495..597466

Molecular Weight (calculated)

37578.9 Da

IEP (calculated)

7.848

GRAVY (calculated)

-0.572

Length

323 amino acids

Sequence
(BLAST)

001: MTTTIREIWS WNKTEEMNLV RESLRSCNYI SVDTEFPGCL KETAMEASEE TRYQNLRFNV DKTKPIQLGF SLFDSEGAIS GTWEVNFSDF DETEDLCNEK
101: SIAFLKRNGL DFKRIREEGV GIKDFFTEFT RMVKDEEDKK IINWVTFDGS YDLGYIIQSM TGRERLPDTS LGFNETVQKL LGLTFDVKKL AGQCKGLNSR
201: FGLQRLADEL GIRRVGEAHH AGSDSQLTAR VFANINLTFS RDLKRKREHE REIVMIRREH DRLQQHLFMQ QVMEQEILMR RCVPRRCYGP VHPPRPIIYA
301: HYPSPRGYFV VPVAPRLSRN AGQ

Best Arabidopsis Sequence Match ( AT1G27820.1 )
(BLAST)

001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL

Arabidopsis Description

CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.